AMTR_s00028p00077900 (QRT1,...)

Aliases : QRT1, evm_27.TU.AmTr_v1.0_scaffold00028.19

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase

Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00028p00077900
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00085870	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
Aev_g16111	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g27753	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
MA_62865g0010	No alias	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Pnu_g11683	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c12_24000V3.1	Pp3c12_24000	Pectin lyase-like superfamily protein	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016132	No alias	pectin methylesterase & original description: CDS=1-684	0.02	OrthoFinder output from all 47 species
Spa_g29378	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g37886	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	56	348

External Links

No external refs found!