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  5. AMTR_s00029p00107550

AMTR_s00029p00107550 (TAF15,...)


Aliases : TAF15, evm_27.TU.AmTr_v1.0_scaffold00029.110

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF15 component


Gene families : OG0003584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003584_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00107550

Target Alias Description ECC score Gene Family Method Actions
Adi_g056342 TAF15 component *(TAF15) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Ceric.10G036100.1 TAF15, Ceric.10G036100 component *(TAF15) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.52 TAF15 RNA biosynthesis.RNA polymerase II-dependent... 0.06 OrthoFinder output from all 47 species
Cre07.g328400 TAF15 RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
GSVIVT01010206001 TAF15 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Gb_28670 TAF15 component TAF15 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species
LOC_Os07g19560.1 TAF15, LOC_Os07g19560 component TAF15 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species
LOC_Os09g12800.1 TAF15, LOC_Os09g12800 component TAF15 of TFIId basal transcription regulation complex 0.04 OrthoFinder output from all 47 species
MA_10434282g0010 TAF15 component TAF15 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species
Mp8g16600.1 TAF15 component TAF15 of TFIId basal transcription regulation complex 0.04 OrthoFinder output from all 47 species
Ore_g08780 TAF15 component *(TAF15) of TFIId basal transcription... 0.04 OrthoFinder output from all 47 species
Solyc11g040050.3.1 TAF15, Solyc11g040050 component TAF15 of TFIId basal transcription regulation complex 0.04 OrthoFinder output from all 47 species
Zm00001e010307_P004 TAF15, Zm00001e010307 component TAF15 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 15 92
IPR001876 Znf_RanBP2 160 189
IPR001876 Znf_RanBP2 229 255
No external refs found!