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  5. AMTR_s00029p00199510

AMTR_s00029p00199510 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.276

Description : RNA biosynthesis.transcriptional activation.LIM transcription factor


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00199510
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
AT2G39900 No alias GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g004397 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g010990 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20871 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21872 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10165 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g34912 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06068 No alias LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g14000 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03324 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05547 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07886 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03006 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00234 No alias LIM-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Pir_g00389 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14488 No alias LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g15172 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22855 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41003 No alias LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 10 65
IPR001781 Znf_LIM 108 163
No external refs found!