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  5. AMTR_s00029p00215750

AMTR_s00029p00215750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.323

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor


Gene families : OG0000160 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000160_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00215750
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene15482.t1 Aspi01Gene15482 MYB-RELATED transcription factor *(MYB-R-R) & original... 0.03 OrthoFinder output from all 47 species
Cba_g08737 No alias MYB-RELATED transcription factor *(MYB-R-R) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g07543 No alias MYB-RELATED transcription factor *(MYB-R-R) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g39065 No alias MYB-RELATED transcription factor *(MYB-R-R) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g06659 No alias MYB-RELATED transcription factor *(MYB-R-R) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01007843001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
LOC_Os01g04930.1 LOC_Os01g04930 transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species
LOC_Os05g10690.1 LOC_Os05g10690 transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Pnu_g26665 No alias MYB-RELATED transcription factor *(MYB-R-R) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016715 No alias MYB-RELATED transcription factor *(MYB-R-R) & original... 0.03 OrthoFinder output from all 47 species
Solyc03g119740.3.1 Solyc03g119740 transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Solyc04g008870.3.1 Solyc04g008870 transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species
Spa_g04347 No alias MYB-RELATED transcription factor *(MYB-R-R) & original... 0.03 OrthoFinder output from all 47 species
Spa_g15891 No alias MYB-RELATED transcription factor *(MYB-R-R) & original... 0.03 OrthoFinder output from all 47 species
Spa_g57220 No alias MYB-RELATED transcription factor *(MYB-R-R) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e025783_P002 Zm00001e025783 transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Zm00001e025784_P001 Zm00001e025784 transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species
Zm00001e027835_P005 Zm00001e027835 transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 15 60
IPR001005 SANT/Myb 118 162
No external refs found!