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  5. AMTR_s00029p00242570

AMTR_s00029p00242570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.421

Description : Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana


Gene families : OG0000448 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000448_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00242570

Target Alias Description ECC score Gene Family Method Actions
AT1G49490 No alias Leucine-rich repeat (LRR) family protein 0.09 OrthoFinder output from all 47 species
AT1G49750 No alias Leucine-rich repeat (LRR) family protein 0.02 OrthoFinder output from all 47 species
AT2G15880 No alias Leucine-rich repeat (LRR) family protein 0.06 OrthoFinder output from all 47 species
AT3G19020 No alias Leucine-rich repeat (LRR) family protein 0.07 OrthoFinder output from all 47 species
AT4G13340 No alias Leucine-rich repeat (LRR) family protein 0.03 OrthoFinder output from all 47 species
AT4G29240 No alias Leucine-rich repeat (LRR) family protein 0.03 OrthoFinder output from all 47 species
AT4G33970 No alias Leucine-rich repeat (LRR) family protein 0.06 OrthoFinder output from all 47 species
Aev_g38511 No alias LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03151 No alias LRR-domain extensin & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10806 LRX2 LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g13913 No alias LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g32918 No alias LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g36028 No alias LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01171 LRX1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18979 No alias LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031843001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.06 OrthoFinder output from all 47 species
Gb_26318 No alias LRR-domain extensin 0.05 OrthoFinder output from all 47 species
LOC_Os01g25460.1 LOC_Os01g25460 LRR-domain extensin 0.03 OrthoFinder output from all 47 species
LOC_Os05g09640.1 LOC_Os05g09640 Leucine-rich repeat extensin-like protein 4... 0.02 OrthoFinder output from all 47 species
Len_g05367 LRX2 LRR-domain extensin & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17909 No alias LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05430 LRX2 LRR-domain extensin & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11374 LRX2 LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17372 No alias LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23899 LRX2 LRR-domain extensin & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31622 No alias LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species
Smo412903 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.02 OrthoFinder output from all 47 species
Solyc01g108900.4.1 Solyc01g108900 LRR-domain extensin 0.05 OrthoFinder output from all 47 species
Solyc12g088950.3.1 Solyc12g088950 Pollen-specific leucine-rich repeat extensin-like... 0.03 OrthoFinder output from all 47 species
Spa_g05733 LRX2 LRR-domain extensin & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26188 No alias LRR-domain extensin & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53147 LRX2 LRR-domain extensin & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46219 LRX2 LRR-domain extensin & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 45 65
No external refs found!