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  5. AMTR_s00029p00246540

AMTR_s00029p00246540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.442

No description available


Gene families : OG0000607 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000607_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00246540
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT2G45830 DTA2 downstream target of AGL15 2 0.06 OrthoFinder output from all 47 species
AT3G61270 No alias Arabidopsis thaliana protein of unknown function (DUF821) 0.04 OrthoFinder output from all 47 species
Adi_g056210 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene60458.t1 Aspi01Gene60458 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10905 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01026871001 DTA2 No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01028972001 No alias No description available 0.01 OrthoFinder output from all 47 species
Gb_34473 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_129161g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_32961g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_53054g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g28357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g52070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000968 No alias not classified & original description: CDS=213-1769 0.04 OrthoFinder output from all 47 species
Smo419091 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc06g076980.4.1 Solyc06g076980 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e024271_P001 Zm00001e024271 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e041315_P004 Zm00001e041315 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006598 CAP10 120 500
No external refs found!