1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00030p00099410

AMTR_s00030p00099410 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.43

Description : RNA biosynthesis.transcriptional activation.GRAS transcription factor


Gene families : OG0002153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00099410

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00156p00061400 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.07 OrthoFinder output from all 47 species
Adi_g023237 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g043317 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g048227 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Adi_g055203 No alias GRAS-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g080255 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Adi_g087308 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088062 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115825 RGA2, GAI GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19082 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ala_g14652 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Dde_g41852 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
GSVIVT01008901001 No alias External stimuli response.biotic... 0.02 OrthoFinder output from all 47 species
Len_g30763 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.06 OrthoFinder output from all 47 species
Msp_g13409 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Nbi_g10445 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Nbi_g12779 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Ore_g09457 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Ore_g12299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28747 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ore_g28748 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ore_g30474 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Pnu_g09579 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.05 OrthoFinder output from all 47 species
Pnu_g24950 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ppi_g04662 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Spa_g25920 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005202 TF_GRAS 127 487
No external refs found!