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  5. AMTR_s00033p00212490

AMTR_s00033p00212490 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.186

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor


Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00033p00212490

Target Alias Description ECC score Gene Family Method Actions
Adi_g024682 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060383 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g14979 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0197.g057380 ADOF1, DOF1 transcription factor *(DOF) & original description: CDS=242-1003 0.02 OrthoFinder output from all 47 species
Dac_g07316 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03345 OBP4 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14972 CDF3 transcription factor *(DOF) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g30636 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011138001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
GSVIVT01038591001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
LOC_Os03g60630.1 LOC_Os03g60630 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Nbi_g07392 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03112 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26540 CDF2 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03743 ADOF1, DOF1 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012148 ADOF1, DOF1 transcription factor *(DOF) & original description: CDS=1-1128 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013517 CDF3 transcription factor *(DOF) & original description: CDS=154-1659 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0156.g023637 CDF3 transcription factor *(DOF) & original description: CDS=1-1434 0.03 OrthoFinder output from all 47 species
Solyc02g077960.3.1 TMO6, Solyc02g077960 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Spa_g12100 CDF2 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003851 Znf_Dof 27 88
No external refs found!