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  5. AMTR_s00033p00243500

AMTR_s00033p00243500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.265

Description : Reticulon-like protein B6 OS=Arabidopsis thaliana


Gene families : OG0000272 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000272_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00033p00243500
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT2G23640 RTNLB13 Reticulan like protein B13 0.06 OrthoFinder output from all 47 species
Ala_g24666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69441 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0037.g026028 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.04 OrthoFinder output from all 47 species
Ceric.21G036700.1 Ceric.21G036700 not classified & original description: pacid=50604177... 0.04 OrthoFinder output from all 47 species
Cre06.g308950 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g05550 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Dcu_g38933 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01005053001 RTNLB13 Reticulon-like protein B13 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Lfl_g27940 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Msp_g26217 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Pir_g02191 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Ppi_g03668 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Solyc02g090370.4.1 Solyc02g090370 ER-associated protein (Reticulon) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003388 Reticulon 9 139
No external refs found!