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  5. AMTR_s00036p00215020

AMTR_s00036p00215020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00036.140

No description available


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00036p00215020
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Adi_g107312 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11014 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33345 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12905 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07702 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.29G070000.1 ARF6, Ceric.29G070000 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dde_g01740 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15200 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20778 ARF14 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01008950001 ARF17 Auxin response factor 17 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01025691001 ARF16 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Gb_23328 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_32404 ARF4 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_39685 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os02g06910.1 ARF6, LOC_Os02g06910 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Pnu_g25925 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: CDS=1-3501 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016361 ARF16 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Solyc06g075150.3.1 ARF16, Solyc06g075150 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g29254 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
InterPro domains Description Start Stop
IPR003311 AUX_IAA 27 69
No external refs found!