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  5. AMTR_s00036p00215270

AMTR_s00036p00215270 (ARF21,...)


Aliases : ARF21, evm_27.TU.AmTr_v1.0_scaffold00036.141

Description : Auxin response factor 7 OS=Oryza sativa subsp. japonica


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00036p00215270

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00067370 ARF10,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT1G34170 ARF13 AUXIN RESPONSE FACTOR 13 0.04 OrthoFinder output from all 47 species
AT1G34310 ARF12 auxin response factor 12 0.03 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044147 ARF16 ARF-type transcription factor & original description: CDS=1-2757 0.03 OrthoFinder output from all 47 species
Ceric.18G034300.1 ARF16, Ceric.18G034300 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G089900.1 HSS, ARF1-BP,... ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G022300.1 ARF6, Ceric.30G022300 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g05781 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09204 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11966 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22354 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30682 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g48060.1 ARF3, ETT, LOC_Os01g48060 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os10g33940.1 ARF16, LOC_Os10g33940 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Lfl_g12182 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15236 ARF1 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g26452 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g33451 ARF10 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g50454 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08938 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31022 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002378 ARF1 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740 TIR5, MSG1,... ARF-type transcription factor & original description: CDS=1-2400 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0090.g018749 ARF10 not classified & original description: CDS=44-817 0.03 OrthoFinder output from all 47 species
Sam_g16405 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22826 No alias transcriptional repressor *(IAA/AUX) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28812 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g096070.3.1 ARF9, Solyc01g096070 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc07g043620.3.1 ARF6, Solyc07g043620 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Solyc11g069500.2.1 ARF10, Solyc11g069500 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Solyc12g006350.3.1 ARF6, Solyc12g006350 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Spa_g55179 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004554_P002 ARF16, Zm00001e004554 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e012670_P001 ARF16, Zm00001e012670 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e015164_P002 ARF10, Zm00001e015164 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e023038_P001 ARF10, Zm00001e023038 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e041248_P001 ARF10, Zm00001e041248 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR003311 AUX_IAA 23 112
No external refs found!