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  5. AMTR_s00038p00182380

AMTR_s00038p00182380 (HY4, ATCRY1, BLU1,...)


Aliases : HY4, ATCRY1, BLU1, OOP2, CRY1, evm_27.TU.AmTr_v1.0_scaffold00038.124

Description : External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CRY cryptochrome photoreceptor


Gene families : OG0000814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00038p00182380
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT4G08920 HY4, ATCRY1,... cryptochrome 1 0.04 OrthoFinder output from all 47 species
Als_g46007 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g11870 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene33736.t1 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g01136 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021579.19 ATCRY2, CRY2,... Cryptochrome-1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g09706 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09253 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02909 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009033001 HY4, ATCRY1,... External stimuli response.light.UV-A/blue... 0.05 OrthoFinder output from all 47 species
LOC_Os02g36380.1 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.05 OrthoFinder output from all 47 species
LOC_Os04g37920.1 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.02 OrthoFinder output from all 47 species
Len_g02360 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g057040.2.1 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.02 OrthoFinder output from all 47 species
Spa_g32030 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003913 DNA photolyase activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004096 catalase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR020978 Cryptochrome_C 345 463
IPR005101 Cryptochr/Photolyase_FAD-bd 43 318
No external refs found!