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  5. AMTR_s00039p00121770

AMTR_s00039p00121770 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00039.75

No description available


Gene families : OG0000422 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000422_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00121770

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00037160 ZAR1,... Disease resistance protein RPM1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G59780 No alias NB-ARC domain-containing disease resistance protein 0.06 OrthoFinder output from all 47 species
AT5G35450 No alias Disease resistance protein (CC-NBS-LRR class) family 0.05 OrthoFinder output from all 47 species
GSVIVT01032825001 No alias Putative disease resistance protein At1g50180... 0.04 OrthoFinder output from all 47 species
GSVIVT01032827001 No alias Putative disease resistance protein At1g50180... 0.03 OrthoFinder output from all 47 species
Gb_25815 No alias Putative disease resistance protein RGA3 OS=Solanum... 0.04 OrthoFinder output from all 47 species
LOC_Os04g21890.1 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os04g46300.1 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os08g32880.1 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os11g12300.1 LOC_Os11g12300 Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os12g37770.1 LOC_Os12g37770 no description available(sp|f7j0n2|rga5r_orysj : 437.0) 0.05 OrthoFinder output from all 47 species
Solyc04g009150.1.1 RPP13, Solyc04g009150 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e011354_P001 Zm00001e011354 no description available(sp|p0do08|pikm2_orysj : 121.0) 0.03 OrthoFinder output from all 47 species
Zm00001e017585_P001 Zm00001e017585 no description available(sp|p0do08|pikm2_orysj : 335.0) 0.04 OrthoFinder output from all 47 species
Zm00001e021926_P001 ZAR1, Zm00001e021926 no description available(sp|f7j0n2|rga5r_orysj : 295.0) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002182 NB-ARC 101 218
No external refs found!