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  5. AMTR_s00040p00052950

AMTR_s00040p00052950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.25

No description available


Gene families : OG0000221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00052950
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT1G01550 BPS1 Protein of unknown function (DUF793) 0.05 OrthoFinder output from all 47 species
AT1G18740 No alias Protein of unknown function (DUF793) 0.08 OrthoFinder output from all 47 species
AT1G74450 No alias Protein of unknown function (DUF793) 0.05 OrthoFinder output from all 47 species
Adi_g009056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g084369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06585 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g33204 BPS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01817 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10598 BPS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24209 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g33025 BPS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01778 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54448 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01622 BPS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07741 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17662 BPS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17514.t1 Aspi01Gene17514 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58350.t1 Aspi01Gene58350 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02551 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G039400.1 Ceric.04G039400 not classified & original description: pacid=50630851... 0.04 OrthoFinder output from all 47 species
Ceric.1Z027800.1 Ceric.1Z027800 not classified & original description: pacid=50597254... 0.04 OrthoFinder output from all 47 species
Ceric.22G029500.1 Ceric.22G029500 not classified & original description: pacid=50614434... 0.03 OrthoFinder output from all 47 species
Ceric.22G031900.1 BPS1, Ceric.22G031900 not classified & original description: pacid=50615144... 0.03 OrthoFinder output from all 47 species
Ceric.22G032000.1 Ceric.22G032000 not classified & original description: pacid=50615093... 0.03 OrthoFinder output from all 47 species
Ceric.22G032100.1 Ceric.22G032100 not classified & original description: pacid=50614987... 0.04 OrthoFinder output from all 47 species
Ceric.22G032200.1 BPS1, Ceric.22G032200 not classified & original description: pacid=50614808... 0.03 OrthoFinder output from all 47 species
Ceric.25G006500.1 Ceric.25G006500 not classified & original description: pacid=50594057... 0.05 OrthoFinder output from all 47 species
Ceric.28G046900.1 Ceric.28G046900 not classified & original description: pacid=50570300... 0.02 OrthoFinder output from all 47 species
Dac_g34503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g42208 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19319 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g23107 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01019411001 ROH1 No description available 0.03 OrthoFinder output from all 47 species
Gb_06674 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_18309 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_18311 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_18312 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_18313 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_22841 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Gb_22842 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os11g06440.1 LOC_Os11g06440 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g11084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430484g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_123240g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_130577g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_16561g0010 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_85744g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g11031 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g35676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g48226 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48320 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g01034 BPS1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g21991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g50256 ROH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013818 No alias not classified & original description: CDS=1-1071 0.03 OrthoFinder output from all 47 species
Solyc04g071480.1.1 Solyc04g071480 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Spa_g07215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009073_P001 Zm00001e009073 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e024656_P001 Zm00001e024656 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008511 ROH1-like 1 383
No external refs found!