AMTR_s00040p00235500 (HB51, ATHB51, LMI1,...)

Aliases : HB51, ATHB51, LMI1, evm_27.TU.AmTr_v1.0_scaffold00040.303

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor

Gene families : OG0000129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00040p00235500
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AT1G27045	No alias	Homeobox-leucine zipper protein family	0.05	OrthoFinder output from all 47 species
AT5G03790	HB51, ATHB51, LMI1	homeobox 51	0.05	OrthoFinder output from all 47 species
Aev_g05414	ATHB16, HB16, ATHB-16	regulatory protein *(LMI1) of floral meristem identity...	0.03	OrthoFinder output from all 47 species
Aev_g10824	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene48842.t1	ATHB13, Aspi01Gene48842	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
MA_10428916g0010	ATHB1, ATHB-1,...	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Mp3g02320.1	ATHB1, ATHB-1,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Msp_g01067	ATHB16, HB16, ATHB-16	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g26580	ATHB3, HB-3, ATHB-3, HAT7	HD-ZIP I/II-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Pir_g24934	ATHB1, ATHB-1,...	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc02g086930.4.1	ATHB1, ATHB-1,...	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species
Solyc03g034130.4.1	ATHB40, HB40,...	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species
Solyc09g008810.3.1	HB51, ATHB51,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	51	103

External Links

No external refs found!

AMTR_s00040p00235500 (HB51, ATHB51, LMI1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation