AMTR_s00041p00081370 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.48

No description available


Gene families : OG0006320 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006320_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00081370

Target Alias Description ECC score Gene Family Method Actions
Adi_g006971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04200.t1 Aspi01Gene04200 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g64110.1 LOC_Os03g64110 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g06638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g23753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27463 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 402 440
IPR001680 WD40_repeat 93 127
IPR001680 WD40_repeat 301 335
No external refs found!