1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00041p00208990

AMTR_s00041p00208990 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.206

Description : Probable amidase At4g34880 OS=Arabidopsis thaliana


Gene families : OG0004248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00208990
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00212520 evm_27.TU.AmTr_v1... Probable amidase At4g34880 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00041p00216070 evm_27.TU.AmTr_v1... Probable amidase At4g34880 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00041p00219760 evm_27.TU.AmTr_v1... Probable amidase At4g34880 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Aev_g13112 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024070001 No alias Probable amidase At4g34880 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_24946 No alias Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Gb_24947 No alias Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g10410.1 LOC_Os04g10410 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os04g10530.1 LOC_Os04g10530 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os10g06710.1 LOC_Os10g06710 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc11g071550.2.1 Solyc11g071550 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!