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  5. AMTR_s00045p00225780

AMTR_s00045p00225780 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.320

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000823 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000823_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00225780

Target Alias Description ECC score Gene Family Method Actions
AT2G47700 RFI2 RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g057310 No alias E3 ubiquitin ligase *(RFI2) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037329 RFI2 E3 ubiquitin ligase *(RFI2) & original description: CDS=481-1608 0.03 OrthoFinder output from all 47 species
Ceric.19G065400.1 RFI2, Ceric.19G065400 E3 ubiquitin ligase *(RFI2) & original description:... 0.03 OrthoFinder output from all 47 species
LOC_Os08g42640.1 LOC_Os08g42640 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_10434318g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Msp_g09804 No alias E3 ubiquitin ligase *(RFI2) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08146 RFI2 E3 ubiquitin ligase *(RFI2) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02173 No alias E3 ubiquitin ligase *(RFI2) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g25311 No alias E3 ubiquitin ligase *(RFI2) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 20 67
No external refs found!