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  5. AMTR_s00046p00066610

AMTR_s00046p00066610 (SPT,...)


Aliases : SPT, evm_27.TU.AmTr_v1.0_scaffold00046.26

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00066610

Target Alias Description ECC score Gene Family Method Actions
AT1G10120 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G68920 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g26066 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Als_g28194 LRL1 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14421 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aop_g21794 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aop_g29424 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g18078 HEC2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g57539 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G084700.1 PIF3, POC1,... bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.39G010000.1 LRL3, Ceric.39G010000 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g16940 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Dac_g23770 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dde_g01271 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25483 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26546 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
GSVIVT01013553001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01018164001 UNE10 Transcription factor UNE10 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01025313001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01026056001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
LOC_Os02g48060.1 RHD6, LOC_Os02g48060 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os09g31300.1 LOC_Os09g31300 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Len_g04280 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_158850g0010 LRL3 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_78485g0010 RSL4 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Msp_g14891 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Nbi_g01184 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03137 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Nbi_g11730 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Pir_g28386 No alias transcriptional co-activator *(FBH) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011982 No alias bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Solyc02g091440.2.1 RHD6, Solyc02g091440 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc09g097870.4.1 Solyc09g097870 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Solyc12g098620.2.1 Solyc12g098620 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Spa_g20083 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Spa_g50491 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006042_P001 Zm00001e006042 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e022005_P003 Zm00001e022005 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Zm00001e032950_P002 UNE12, Zm00001e032950 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 188 234
No external refs found!