AMTR_s00046p00076360 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00046.31

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS16 component

Gene families : OG0002224 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002224_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00046p00076360

Target	Alias	Description	ECC score	Gene Family Method
AT2G09990	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.17	OrthoFinder output from all 47 species
Adi_g074671	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Als_g60143	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g64161	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aop_g00146	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Aop_g19106	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g22405	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0018.g014901	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0041.g026702	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g68462	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.05G019700.1	Ceric.05G019700	component *(uS9) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ceric.19G055700.1	Ceric.19G055700	component *(uS9) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000123.14	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	OrthoFinder output from all 47 species
Cre13.g573351	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	OrthoFinder output from all 47 species
Dac_g12959	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Dde_g28042	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01017923001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.21	OrthoFinder output from all 47 species
GSVIVT01031714001	No alias	40S ribosomal protein S16-3 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Gb_05712	No alias	component RPS16 of SSU proteome	0.14	OrthoFinder output from all 47 species
Gb_29914	No alias	component RPS16 of SSU proteome	0.15	OrthoFinder output from all 47 species
LOC_Os11g03400.1	LOC_Os11g03400	component RPS16 of SSU proteome	0.07	OrthoFinder output from all 47 species
LOC_Os12g03090.1	LOC_Os12g03090	component RPS16 of SSU proteome	0.09	OrthoFinder output from all 47 species
Len_g13370	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Len_g55652	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
MA_2656g0010	No alias	40S ribosomal protein S16 OS=Gossypium hirsutum...	0.12	OrthoFinder output from all 47 species
MA_32670g0010	No alias	component RPS16 of SSU proteome	0.18	OrthoFinder output from all 47 species
Mp1g07720.1	No alias	component RPS16 of SSU proteome	0.11	OrthoFinder output from all 47 species
Mp1g14290.1	No alias	component RPS16 of SSU proteome	0.27	OrthoFinder output from all 47 species
Msp_g41319	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Pir_g56340	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c19_22410V3.1	Pp3c19_22410	Ribosomal protein S5 domain 2-like superfamily protein	0.15	OrthoFinder output from all 47 species
Pp3c21_20630V3.1	Pp3c21_20630	Ribosomal protein S5 domain 2-like superfamily protein	0.16	OrthoFinder output from all 47 species
Pp3c9_4180V3.1	Pp3c9_4180	Ribosomal protein S5 domain 2-like superfamily protein	0.07	OrthoFinder output from all 47 species
Ppi_g20397	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g23947	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g33948	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0170.g024366	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g19273	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Smo138369	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	OrthoFinder output from all 47 species
Solyc01g068530.3.1	Solyc01g068530	component RPS16 of SSU proteome	0.22	OrthoFinder output from all 47 species
Solyc04g026100.1.1	Solyc04g026100	component RPS16 of SSU proteome	0.23	OrthoFinder output from all 47 species
Solyc05g005690.1.1	Solyc05g005690	component RPS16 of SSU proteome	0.2	OrthoFinder output from all 47 species
Spa_g11660	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Tin_g12571	No alias	component *(uS9) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Zm00001e009230_P001	Zm00001e009230	component RPS16 of SSU proteome	0.11	OrthoFinder output from all 47 species
Zm00001e020865_P003	Zm00001e020865	component RPS16 of SSU proteome	0.12	OrthoFinder output from all 47 species
Zm00001e039245_P001	Zm00001e039245	component RPS16 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000754	Ribosomal_S9	16	148

External Links

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AMTR_s00046p00076360 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation