Aliases : ATSPO11-1, evm_27.TU.AmTr_v1.0_scaffold00047.32
Description : Cell cycle.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.component a (SPO11)
Gene families : OG0001338 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001338_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00047p00084750 | |
| Cluster | HCCA: Cluster_92 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g019848 | BIN5, RHL2 | component *(TOP6A) of somatic DNA topoisomerase VI... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g23842 | ATSPO11-1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| MF | GO:0003824 | catalytic activity | IEA | Interproscan |
| MF | GO:0005524 | ATP binding | IEA | Interproscan |
| CC | GO:0005694 | chromosome | IEA | Interproscan |
| BP | GO:0006259 | DNA metabolic process | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004592 | pantoate-beta-alanine ligase activity | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | HCCA |
| BP | GO:0006766 | vitamin metabolic process | IEP | HCCA |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | HCCA |
| BP | GO:0006855 | xenobiotic transmembrane transport | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| MF | GO:0008565 | obsolete protein transporter activity | IEP | HCCA |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | HCCA |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015297 | antiporter activity | IEP | HCCA |
| BP | GO:0015939 | pantothenate metabolic process | IEP | HCCA |
| BP | GO:0015940 | pantothenate biosynthetic process | IEP | HCCA |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
| MF | GO:0016881 | acid-amino acid ligase activity | IEP | HCCA |
| BP | GO:0030258 | lipid modification | IEP | HCCA |
| BP | GO:0030259 | lipid glycosylation | IEP | HCCA |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0042908 | xenobiotic transport | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0070085 | glycosylation | IEP | HCCA |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013049 | Spo11/TopoVI_A_N | 75 | 140 |
| No external refs found! |
