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  5. AMTR_s00048p00141400

AMTR_s00048p00141400 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.90

Description : 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00141400
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Ala_g10320 ACOS5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22282 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g70699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0230.g059166 OPCL1 not classified & original description: CDS=193-1959 0.02 OrthoFinder output from all 47 species
Ceric.25G005800.1 OPCL1, Ceric.25G005800 not classified & original description: pacid=50594129... 0.02 OrthoFinder output from all 47 species
GSVIVT01011541001 No alias 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_04708 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_19726 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_10426784g0010 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g43750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g52029 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g094520.2.1 OPCL1, Solyc12g094520 OPC-8:CoA synthetase 0.02 OrthoFinder output from all 47 species
Spa_g28398 AT4CL2, 4CL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12748 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0008152 metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 57 485
No external refs found!