AMTR_s00049p00071550 (emb1354, CDC48C,...)

Aliases : emb1354, CDC48C, evm_27.TU.AmTr_v1.0_scaffold00049.44

Description : Cell division control protein 48 homolog C OS=Arabidopsis thaliana

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00049p00071550

Target	Alias	Description	ECC score	Gene Family Method
Adi_g054679	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g20068	CIP111	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02580	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene27195.t1	emb1354, CDC48C,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22418	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g67891	CDC48A, CDC48, ATCDC48	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g77518	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g02340	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07885	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09970	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01010343001	emb1354, CDC48C	Cell division control protein 48 homolog C...	0.03	OrthoFinder output from all 47 species
Len_g28733	CIP111	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Len_g32887	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g36367	CIP111	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g03860	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g00760	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Smo173081	CDC48B	Cell division control protein 48 homolog B...	0.04	OrthoFinder output from all 47 species
Spa_g11219	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g19659	CIP111	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e035514_P002	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015093	ferrous iron transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	253	398
IPR003959	ATPase_AAA_core	557	685

External Links

No external refs found!

AMTR_s00049p00071550 (emb1354, CDC48C,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation