AMTR_s00055p00227100 (GLR2.2, ATGLR2.2,...)

Aliases : GLR2.2, ATGLR2.2, evm_27.TU.AmTr_v1.0_scaffold00055.178

Description : Solute transport.channels.GLR ligand-gated cation channel

Gene families : OG0000075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00055p00227100

Target	Alias	Description	ECC score	Gene Family Method
AT2G29100	ATGLR2.9, GLR2.9	glutamate receptor 2.9	0.03	OrthoFinder output from all 47 species
AT5G48400	ATGLR1.2, GLR1.2	Glutamate receptor family protein	0.04	OrthoFinder output from all 47 species
Adi_g026439	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g33532	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g62161	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene64329.t1	GLR3.3,...	ligand-gated cation channel *(GLR) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene65110.t2	GLR3.3,...	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene71554.t1	ATGLR3.5, GLR6,...	ligand-gated cation channel *(GLR) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.01G008100.1	ATGLR3.2,...	ligand-gated cation channel *(GLR) & original...	0.05	OrthoFinder output from all 47 species
Dcu_g51771	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g07200	GLR3.6, ATGLR3.6	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g26350	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01022297001	GLR3.6, ATGLR3.6	Solute transport.channels.GLR ligand-gated cation channel	0.02	OrthoFinder output from all 47 species
GSVIVT01029195001	GLR2.2, ATGLR2.2	Solute transport.channels.GLR ligand-gated cation channel	0.02	OrthoFinder output from all 47 species
GSVIVT01033131001	GLR2.8, ATGLR2.8	Solute transport.channels.GLR ligand-gated cation channel	0.06	OrthoFinder output from all 47 species
GSVIVT01033142001	GLR2.8, ATGLR2.8	Solute transport.channels.GLR ligand-gated cation channel	0.04	OrthoFinder output from all 47 species
Gb_20692	ATGLR3.2,...	ligand-gated cation channel (GLR)	0.04	OrthoFinder output from all 47 species
Len_g00747	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g10645	GLUR3, GLR3.4, ATGLR3.4	ligand-gated cation channel *(GLR) & original description: none	0.04	OrthoFinder output from all 47 species
Len_g36345	GLUR3, GLR3.4, ATGLR3.4	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g46456	GLUR3, GLR3.4, ATGLR3.4	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g55769	ATGLR3.5, GLR6, GLR3.5	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10426811g0010	GLUR3, GLR3.4, ATGLR3.4	ligand-gated cation channel (GLR)	0.03	OrthoFinder output from all 47 species
Msp_g17155	GLUR3, GLR3.4, ATGLR3.4	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g09999	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g29585	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g58130	GLR3.6, ATGLR3.6	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17572	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011008	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0204.g025676	GLUR3, GLR3.4, ATGLR3.4	ligand-gated cation channel *(GLR) & original...	0.02	OrthoFinder output from all 47 species
Solyc06g063170.3.1	GLR2.8,...	ligand-gated cation channel (GLR)	0.06	OrthoFinder output from all 47 species
Zm00001e013021_P001	GLUR3, GLR3.4,...	ligand-gated cation channel (GLR)	0.03	OrthoFinder output from all 47 species
Zm00001e023728_P001	GLR2.8,...	ligand-gated cation channel (GLR)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0004888	transmembrane signaling receptor activity	None	Extended
MF	GO:0004970	ionotropic glutamate receptor activity	IEA	Interproscan
MF	GO:0005215	transporter activity	IEA	Interproscan
MF	GO:0005216	monoatomic ion channel activity	None	Extended
MF	GO:0005230	extracellular ligand-gated monoatomic ion channel activity	None	Extended
MF	GO:0005231	excitatory extracellular ligand-gated monoatomic ion channel activity	None	Extended
MF	GO:0005234	extracellularly glutamate-gated ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	IEA	Interproscan
MF	GO:0008066	glutamate receptor activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated monoatomic ion channel activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022824	transmitter-gated monoatomic ion channel activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022835	transmitter-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022839	monoatomic ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0030288	outer membrane-bounded periplasmic space	IEA	Interproscan
MF	GO:0030594	neurotransmitter receptor activity	None	Extended
MF	GO:0038023	signaling receptor activity	None	Extended
CC	GO:0042597	periplasmic space	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001638	Solute-binding_3/MltF_N	508	773
IPR001320	Iontro_rcpt_C	608	714
IPR001828	ANF_lig-bd_rcpt	67	416

External Links

No external refs found!

AMTR_s00055p00227100 (GLR2.2, ATGLR2.2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation