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  5. AMTR_s00056p00165600

AMTR_s00056p00165600 (SRO5,...)


Aliases : SRO5, evm_27.TU.AmTr_v1.0_scaffold00056.145

Description : Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana


Gene families : OG0000733 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00165600

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013090001 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.03 OrthoFinder output from all 47 species
Gb_12340 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.04 OrthoFinder output from all 47 species
LOC_Os04g57640.1 AtRCD1, RCD1,... Probable inactive poly [ADP-ribose] polymerase SRO1... 0.03 OrthoFinder output from all 47 species
MA_577g0010 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.03 OrthoFinder output from all 47 species
Ore_g29275 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR004170 WWE-dom 5 59
IPR012317 Poly(ADP-ribose)pol_cat_dom 458 551
IPR022003 RST 662 723
No external refs found!