AMTR_s00057p00172690 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.180

Description : Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00172690

Target Alias Description ECC score Gene Family Method Actions
Adi_g002336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g008596 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g010854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g016118 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g019759 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036784 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060808 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074266 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085510 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20856 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24191 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g43288 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44680 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18780 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30845 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04456 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18410 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30566 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56884 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58336 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g23810 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27561 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37587 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40546 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g42859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02394.t1 Aspi01Gene02394 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02996.t1 CRR2, Aspi01Gene02996 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene21013.t1 CRR22, Aspi01Gene21013 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56416.t1 CRR22, Aspi01Gene56416 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001193 No alias not classified & original description: CDS=1-1761 0.04 OrthoFinder output from all 47 species
Azfi_s0012.g012913 No alias not classified & original description: CDS=1-2943 0.06 OrthoFinder output from all 47 species
Cba_g03409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04691 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05154 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05330 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07022 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07727 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17193 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20102 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g21792 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35114 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37893 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g45673 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45687 MEF22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g66834 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67712 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75136 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G071400.1 Ceric.02G071400 not classified & original description: pacid=50584970... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.01 OrthoFinder output from all 47 species
Dac_g05109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g28223 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30413 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36032 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g36894 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43254 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08185 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08260 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17218 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45850 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05785 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21849 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g35440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50888 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 OrthoFinder output from all 47 species
GSVIVT01031251001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
Gb_31457 EMB2261 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Gb_33718 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_35407 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os01g42280.1 CRR21, LOC_Os01g42280 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 47 species
LOC_Os04g02850.1 OTP84, LOC_Os04g02850 RNA editing factor (OTP84) 0.08 OrthoFinder output from all 47 species
LOC_Os10g39460.2 LOC_Os10g39460 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os11g29230.1 CRR22, LOC_Os11g29230 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Len_g18251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18801 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g49921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06198 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07019 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07835 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08420 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_18383g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_36655g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Msp_g14332 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g21065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05873 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08298 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21727 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36262 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g39201 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57980 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03155 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18373 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23601 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30296 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30631 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03900 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04603 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05264 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05912 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06328 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22121 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41025 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g52827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53705 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g55596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59330 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59836 EMB2758 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006578 No alias not classified & original description: CDS=156-2555 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007686 No alias not classified & original description: CDS=1-1089 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0170.g024361 OTP84 cyclin-dependent kinase inhibitor *(KRP/ICK) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0233.g026492 No alias not classified & original description: CDS=48-2072 0.05 OrthoFinder output from all 47 species
Sam_g04342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16320 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g21461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g33428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36635 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo115590 REME1 Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species
Solyc01g095690.2.1 Solyc01g095690 Pentatricopeptide repeat-containing protein At4g01030,... 0.03 OrthoFinder output from all 47 species
Solyc02g081900.4.1 OTP84, Solyc02g081900 RNA editing factor (OTP84) 0.05 OrthoFinder output from all 47 species
Solyc03g025700.2.1 Solyc03g025700 OTP70 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc04g076800.3.1 CRR22, Solyc04g076800 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Spa_g06564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09254 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g16989 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 152 201
IPR002885 Pentatricopeptide_repeat 228 252
IPR002885 Pentatricopeptide_repeat 362 390
IPR002885 Pentatricopeptide_repeat 256 286
No external refs found!