AMTR_s00060p00109730 (ATGSR1, GLN1;1,...)

Aliases : ATGSR1, GLN1;1, ATGLN1;1, GSR 1, evm_27.TU.AmTr_v1.0_scaffold00060.52

Description : Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase

Gene families : OG0000646 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000646_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00060p00109730

Target	Alias	Description	ECC score	Gene Family Method
Ala_g32829	ATGSR1, GLN1;1,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g58378	GLN1;4	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Aob_g09347	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.04	OrthoFinder output from all 47 species
Aop_g15854	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene33935.t1	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene53323.t1	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene56798.t1	GLN1;4, Aspi01Gene56798	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0002.g001200	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0043.g026977	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Cba_g37834	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.21G070700.1	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.02	OrthoFinder output from all 47 species
Dac_g05010	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.02	OrthoFinder output from all 47 species
Dac_g05038	GLN1;4	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.02	OrthoFinder output from all 47 species
Dde_g08307	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01008483001	ATGSR1, GLN1;1,...	Nutrient uptake.nitrogen assimilation.ammonium...	0.03	OrthoFinder output from all 47 species
LOC_Os03g50490.1	ATGSR1, GLN1;1,...	cytosolic glutamine synthetase (GLN1)	0.02	OrthoFinder output from all 47 species
Len_g44821	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Lfl_g25441	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Lfl_g26898	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.04	OrthoFinder output from all 47 species
MA_15508g0010	ATGSR1, GLN1;1,...	cytosolic glutamine synthetase (GLN1)	0.02	OrthoFinder output from all 47 species
MA_9199701g0010	ATGSR1, GLN1;1,...	Glutamine synthetase cytosolic isozyme OS=Pinus...	0.02	OrthoFinder output from all 47 species
Mp3g09300.1	GLN1.3, ATGSKB6, GLN1;3	Glutamine synthetase PR-1 OS=Phaseolus vulgaris...	0.03	OrthoFinder output from all 47 species
Mp5g13580.1	ATGSR1, GLN1;1,...	cytosolic glutamine synthetase (GLN1)	0.03	OrthoFinder output from all 47 species
Mp6g06750.1	GLN1;4	cytosolic glutamine synthetase (GLN1)	0.03	OrthoFinder output from all 47 species
Pir_g34281	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.06	OrthoFinder output from all 47 species
Pp3c18_10760V3.1	GLN1;4, Pp3c18_10760	glutamine synthetase 1;4	0.02	OrthoFinder output from all 47 species
Pp3c18_10780V3.1	GLN1;4, Pp3c18_10780	glutamine synthetase 1;4	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023030	GLN1;4	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.04	OrthoFinder output from all 47 species
Solyc11g011380.2.1	ATGSR1, GLN1;1,...	cytosolic glutamine synthetase (GLN1)	0.03	OrthoFinder output from all 47 species
Tin_g02581	ATGSR1, GLN1;1,...	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.04	OrthoFinder output from all 47 species
Zm00001e000880_P002	ATGSR1, GLN1;1,...	Glutamine synthetase root isozyme 1 OS=Zea mays...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004356	glutamate-ammonia ligase activity	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006541	glutamine metabolic process	None	Extended
BP	GO:0006542	glutamine biosynthetic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009064	glutamine family amino acid metabolic process	None	Extended
BP	GO:0009084	glutamine family amino acid biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016211	ammonia ligase activity	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	None	Extended
MF	GO:0016880	acid-ammonia (or amide) ligase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004478	methionine adenosyltransferase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016841	ammonia-lyase activity	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0050662	obsolete coenzyme binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008146	Gln_synth_cat_dom	104	349
IPR008147	Gln_synt_N	19	97

External Links

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AMTR_s00060p00109730 (ATGSR1, GLN1;1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation