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  5. AMTR_s00061p00142700

AMTR_s00061p00142700 (ATRBP31, CP31,...)


Aliases : ATRBP31, CP31, ATRBP33, RBP31, evm_27.TU.AmTr_v1.0_scaffold00061.123

Description : RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor


Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00142700
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT2G35410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 OrthoFinder output from all 47 species
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT3G52150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 OrthoFinder output from all 47 species
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.13 OrthoFinder output from all 47 species
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.08 OrthoFinder output from all 47 species
AT5G50250 CP31B chloroplast RNA-binding protein 31B 0.04 OrthoFinder output from all 47 species
Adi_g019289 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g053286 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074962 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g39448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07067 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14081 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010976 No alias not classified & original description: CDS=261-1286 0.03 OrthoFinder output from all 47 species
Azfi_s0017.g014465 ATRBP31, CP31,... not classified & original description: CDS=173-1078 0.03 OrthoFinder output from all 47 species
Azfi_s0037.g026033 No alias not classified & original description: CDS=1-825 0.04 OrthoFinder output from all 47 species
Azfi_s0159.g053948 ATRBP31, CP31,... not classified & original description: CDS=143-1057 0.05 OrthoFinder output from all 47 species
Cba_g67827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G096500.1 ATRBP31, CP31,... not classified & original description: pacid=50595915... 0.04 OrthoFinder output from all 47 species
Dac_g16732 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g00421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05473 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007596001 CP31B RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01013146001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.08 OrthoFinder output from all 47 species
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.05 OrthoFinder output from all 47 species
GSVIVT01032039001 No alias Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
GSVIVT01032361001 CP31B RNA processing.organelle machineries.RNA... 0.08 OrthoFinder output from all 47 species
Gb_05747 PDE322, CP33 component psPSRP2 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Gb_28108 CP31B 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Gb_32176 No alias component psPSRP2 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os02g57010.1 LOC_Os02g57010 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
LOC_Os03g25960.1 LOC_Os03g25960 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os04g50110.1 LOC_Os04g50110 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os07g06450.1 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os08g44290.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
LOC_Os09g10760.1 LOC_Os09g10760 component psPSRP2 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
LOC_Os09g39180.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.09 OrthoFinder output from all 47 species
Len_g10051 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16035 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_65183g0010 No alias component psPSRP2 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.09 OrthoFinder output from all 47 species
Mp3g24820.1 CP31B RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g04850 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06420 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02906 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03561 CP31B not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g11334 CP31B not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19962 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19963 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27196 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02206 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06203 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.03 OrthoFinder output from all 47 species
Pp3c24_17170V3.1 Pp3c24_17170 chloroplast RNA-binding protein 29 0.01 OrthoFinder output from all 47 species
Ppi_g02835 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015482 ATRBP31, CP31,... not classified & original description: CDS=157-1524 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021464 CP31B not classified & original description: CDS=19-840 0.04 OrthoFinder output from all 47 species
Sam_g06842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g006940.4.1 PDE322, CP33,... 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 OrthoFinder output from all 47 species
Solyc03g111840.3.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.08 OrthoFinder output from all 47 species
Solyc04g074750.3.1 Solyc04g074750 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Solyc08g076840.3.1 Solyc08g076840 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 OrthoFinder output from all 47 species
Solyc09g090960.4.1 Solyc09g090960 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
Solyc10g086150.2.1 Solyc10g086150 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Spa_g07687 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g08465 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001824_P002 Zm00001e001824 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e003947_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.07 OrthoFinder output from all 47 species
Zm00001e007101_P002 Zm00001e007101 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Zm00001e022086_P002 ATRBP31, CP31,... RNA editing factor (CP31) 0.05 OrthoFinder output from all 47 species
Zm00001e032835_P001 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e033465_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.06 OrthoFinder output from all 47 species
Zm00001e033636_P003 Zm00001e033636 component psPSRP2 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Zm00001e035630_P001 Zm00001e035630 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 130 199
IPR000504 RRM_dom 223 293
No external refs found!