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  5. AMTR_s00062p00146590

AMTR_s00062p00146590 (PAP18, ATPAP18,...)


Aliases : PAP18, ATPAP18, evm_27.TU.AmTr_v1.0_scaffold00062.134

Description : Purple acid phosphatase 18 OS=Arabidopsis thaliana


Gene families : OG0000640 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000640_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00062p00146590

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene17600.t1 PAP15, ATPAP15,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033822001 ATPAP22, PAP22 Purple acid phosphatase 22 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01037630001 PAP18, ATPAP18 Purple acid phosphatase 18 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_31158 ATPAP22, PAP22 Purple acid phosphatase 22 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_31160 PAP18, ATPAP18 Purple acid phosphatase 18 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g37130.1 PAP18, ATPAP18,... Purple acid phosphatase 18 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os12g05510.1 ATPAP22, PAP22,... Purple acid phosphatase 21 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sam_g17172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g051640.3.1 ATPAP23, PAP23,... Purple acid phosphatase 23 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc09g091910.2.1 PAP15, ATPAP15,... Purple acid phosphatase 15 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR025733 Purple_acid_PPase_C_dom 347 404
IPR004843 Calcineurin-like_PHP_ApaH 141 331
No external refs found!