Aliases : SHR, SGR7, evm_27.TU.AmTr_v1.0_scaffold00066.229
Description : External stimuli response.gravity.sensing and signalling.SHR transcription factor
Gene families : OG0003562 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003562_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00066p00182770 | |
| Cluster | HCCA: Cluster_49 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G37650 | SHR, SGR7 | GRAS family transcription factor | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g082025 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g06030 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g17904 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g31871 | SHR, SGR7 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene15940.t1 | SHR, SGR7,... | gravity signalling transcription factor *(SHR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene17700.t1 | SHR, SGR7,... | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene17704.t1 | SHR, SGR7,... | gravity signalling transcription factor *(SHR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g08230 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.38G001000.1 | SHR, SGR7,... | gravity signalling transcription factor *(SHR) &... | 0.09 | OrthoFinder output from all 47 species | |
| Dde_g29734 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01000107001 | SHR, SGR7 | External stimuli response.gravity.sensing and... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01004104001 | SHR, SGR7 | External stimuli response.gravity.sensing and... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_17251 | SHR, SGR7 | transcription factor (GRAS). SHR gravity signalling... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g31880.1 | SHR, SGR7, LOC_Os03g31880 | transcription factor (GRAS). SHR gravity signalling... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os07g39820.1 | SHR, SGR7, LOC_Os07g39820 | transcription factor (GRAS). SHR gravity signalling... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g46830 | SHR, SGR7 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| MA_99004g0020 | SHR, SGR7 | transcription factor (GRAS). SHR gravity signalling... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g33336 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g27147 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g40178 | SHR, SGR7 | gravity signalling transcription factor *(SHR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g092370.1.1 | SHR, SGR7, Solyc02g092370 | transcription factor (GRAS). SHR gravity signalling... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc08g014030.1.1 | SHR, SGR7, Solyc08g014030 | transcription factor (GRAS). SHR gravity signalling... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e002085_P001 | SHR, SGR7, Zm00001e002085 | transcription factor (GRAS). SHR gravity signalling... | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e035411_P001 | SHR, SGR7, Zm00001e035411 | transcription factor (GRAS). SHR gravity signalling... | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004857 | enzyme inhibitor activity | IEP | HCCA |
| CC | GO:0005618 | cell wall | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016757 | glycosyltransferase activity | IEP | HCCA |
| MF | GO:0016758 | hexosyltransferase activity | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0030234 | enzyme regulator activity | IEP | HCCA |
| CC | GO:0030312 | external encapsulating structure | IEP | HCCA |
| MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0042545 | cell wall modification | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
| MF | GO:0045735 | nutrient reservoir activity | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
| BP | GO:0071555 | cell wall organization | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0098772 | molecular function regulator activity | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| MF | GO:0140678 | molecular function inhibitor activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005202 | TF_GRAS | 50 | 414 |
| No external refs found! |
