Aliases : evm_27.TU.AmTr_v1.0_scaffold00067.178
Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL28 component
Gene families : OG0006464 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006464_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00067p00174670 | |
| Cluster | HCCA: Cluster_35 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G33450 | No alias | Ribosomal L28 family | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g02708 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g54254 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01027870001 | No alias | Protein biosynthesis.organelle translation... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os05g01110.1 | LOC_Os05g01110 | component psRPL28 of large ribosomal subunit proteome | 0.05 | OrthoFinder output from all 47 species | |
| Len_g11369 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10426581g0010 | No alias | component psRPL28 of large ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c5_28500V3.1 | Pp3c5_28500 | Ribosomal L28 family | 0.01 | OrthoFinder output from all 47 species | |
| Solyc09g090410.3.1 | Solyc09g090410 | component psRPL28 of large ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e004728_P001 | Zm00001e004728 | component psRPL28 of large ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005622 | intracellular anatomical structure | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| MF | GO:0004427 | inorganic diphosphate phosphatase activity | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001383 | Ribosomal_L28 | 87 | 147 |
| No external refs found! |
