AMTR_s00068p00090790 (TUA3,...)

Aliases : TUA3, evm_27.TU.AmTr_v1.0_scaffold00068.45

Description : Cytoskeleton.microtubular network.alpha-beta-Tubulin heterodimer.alpha-Tubulin component

Gene families : OG0000233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00068p00090790

Target	Alias	Description	ECC score	Gene Family Method
AT5G19770	TUA3	tubulin alpha-3	0.03	OrthoFinder output from all 47 species
AT5G19780	TUA5	tubulin alpha-5	0.03	OrthoFinder output from all 47 species
Ala_g23348	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Ala_g31827	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Als_g08220	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Als_g14338	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Aob_g21186	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Aop_g04158	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Aop_g19224	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Aop_g62975	TUA3	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Aop_g70011	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Aspi01Gene19402.t1	TOR2, TUA4,...	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Aspi01Gene37584.t1	TOR2, TUA4,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g09507	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ceric.04G081800.1	TOR2, TUA4,...	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Ceric.24G052000.1	TOR2, TUA4,...	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Ceric.25G032200.1	TOR2, TUA4,...	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000404.34	TOR2, TUA4	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.01	OrthoFinder output from all 47 species
Dac_g09352	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Dac_g10504	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Dac_g12327	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Dac_g17896	TOR2, TUA4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g22398	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Dcu_g09742	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Dcu_g13468	TUA3	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Dcu_g17258	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
GSVIVT01037046001	TOR2, TUA4	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Gb_07962	TOR2, TUA4	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.04	OrthoFinder output from all 47 species
Len_g10840	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Len_g12227	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Len_g22593	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Mp1g24530.1	TOR2, TUA4	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.04	OrthoFinder output from all 47 species
Mp4g00550.1	TUA3	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species
Msp_g17277	TUA6	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Msp_g24914	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ore_g03977	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ore_g28972	TUA3	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Pir_g02520	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Pp3c25_1010V3.1	TUA3, Pp3c25_1010	tubulin alpha-5	0.02	OrthoFinder output from all 47 species
Ppi_g11595	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ppi_g14945	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Ppi_g28726	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ppi_g57594	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Sam_g09229	No alias	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Sam_g09230	No alias	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Sam_g16660	No alias	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Sam_g35588	No alias	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Sam_g40363	No alias	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Smo100162	TOR2, TUA4	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Smo230143	TOR2, TUA4	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Tin_g05948	TUA6	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Tin_g09529	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0006184	obsolete GTP catabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0051258	protein polymerization	IEA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	263	393
IPR003008	Tubulin_FtsZ_GTPase	3	225

External Links

No external refs found!

AMTR_s00068p00090790 (TUA3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation