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  5. AMTR_s00068p00180820

AMTR_s00068p00180820 (EMB1989, RPB2, NRPB2,...)


Aliases : EMB1989, RPB2, NRPB2, evm_27.TU.AmTr_v1.0_scaffold00068.137

Description : DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00068p00180820

Target Alias Description ECC score Gene Family Method Actions
Ala_g11519 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene14104.t1 NRPD2B, Aspi01Gene14104 component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ceric.05G020900.1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Gb_30006 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
MA_10434923g0010 NRPD2B subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR007120 DNA-dir_RNAP_su2_dom 1 39
IPR007120 DNA-dir_RNAP_su2_dom 84 222
No external refs found!