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  5. AMTR_s00069p00153410

AMTR_s00069p00153410 (NRPD1A, POL IVA,...)


Aliases : NRPD1A, POL IVA, NRPD1, SMD2, SDE4, evm_27.TU.AmTr_v1.0_scaffold00069.121

Description : DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana


Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00153410

Target Alias Description ECC score Gene Family Method Actions
Als_g23321 DRD3, ATNRPD1B,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_11654 NRPD1A, POL IVA,... subunit 1 of Pol IV RNA polymerase 0.03 OrthoFinder output from all 47 species
Gb_24058 NRPD1A, POL IVA,... subunit 1 of Pol IV RNA polymerase 0.03 OrthoFinder output from all 47 species
Msp_g14369 NRPD1A, POL IVA,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Msp_g21586 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g38982 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!