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  5. AMTR_s00076p00127530

AMTR_s00076p00127530 (LBD4,...)


Aliases : LBD4, evm_27.TU.AmTr_v1.0_scaffold00076.41

Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00076p00127530
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00153120 LBD1,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
AMTR_s00184p00044240 LBD4,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
AT1G06280 LBD2 LOB domain-containing protein 2 0.04 OrthoFinder output from all 47 species
AT1G07900 LBD1 LOB domain-containing protein 1 0.03 OrthoFinder output from all 47 species
AT1G16530 LBD3, ASL9 ASYMMETRIC LEAVES 2-like 9 0.04 OrthoFinder output from all 47 species
AT1G31320 LBD4 LOB domain-containing protein 4 0.03 OrthoFinder output from all 47 species
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.04 OrthoFinder output from all 47 species
AT2G28500 LBD11 LOB domain-containing protein 11 0.03 OrthoFinder output from all 47 species
AT2G30130 LBD12, ASL5, PCK1 Lateral organ boundaries (LOB) domain family protein 0.03 OrthoFinder output from all 47 species
AT2G30340 LBD13 LOB domain-containing protein 13 0.04 OrthoFinder output from all 47 species
AT2G31310 LBD14 LOB domain-containing protein 14 0.04 OrthoFinder output from all 47 species
AT2G42430 LBD16, ASL18 lateral organ boundaries-domain 16 0.02 OrthoFinder output from all 47 species
AT2G42440 No alias Lateral organ boundaries (LOB) domain family protein 0.03 OrthoFinder output from all 47 species
AT3G03760 LBD20 LOB domain-containing protein 20 0.04 OrthoFinder output from all 47 species
AT4G00220 LBD30, JLO Lateral organ boundaries (LOB) domain family protein 0.05 OrthoFinder output from all 47 species
Adi_g085261 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085262 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113714 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g00680 AS2 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16089 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38835 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27571 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33932 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g00489 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03525 AS2 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g48421 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09772 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00489 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70670 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18506.t1 LBD29, ASL16,... AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41937.t1 AS2, Aspi01Gene41937 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene65362.t1 AS2, Aspi01Gene65362 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66498.t1 LBD4, Aspi01Gene66498 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0225.g058902 LBD4 AS2/LOB-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0305.g063899 LBD15, ASL11 AS2/LOB-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g02965 LBD4 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G082500.1 LOB, Ceric.01G082500 AS2/LOB-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.02G060200.1 LBD15, ASL11,... AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G084800.1 LBD25, Ceric.12G084800 AS2/LOB-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.1Z047200.1 LBD27, SCP,... AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.25G076300.1 AS2, Ceric.25G076300 AS2/LOB-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dac_g06562 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g06666 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g34747 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10151 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43172 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g29091 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46233 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46319 LBD20 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01003546001 LBD10 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01003548001 ASL1, LBD36 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01004323001 ASL1, LBD36 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01006269001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01007677001 LOB RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 OrthoFinder output from all 47 species
GSVIVT01013631001 LBD4 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01016328001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01016330001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01016333001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 OrthoFinder output from all 47 species
GSVIVT01016334001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 OrthoFinder output from all 47 species
GSVIVT01016335001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01018486001 ASL1, LBD36 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01024662001 LBD12, ASL5, PCK1 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01027620001 LBD19 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01029979001 LBD20 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01032714001 LBD15, ASL11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01032752001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
Gb_02663 LBD18 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Gb_08465 LBD4 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Gb_10524 LBD15, ASL11 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Gb_11325 LBD4 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Gb_14010 LBD20 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Gb_20676 LBD1 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_21467 LBD22 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_23794 LBD12, ASL5, PCK1 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Gb_29853 LBD4 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Gb_39343 LBD20 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Gb_40645 LBD3, ASL9 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Gb_40684 LBD11 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_40685 LBD11 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os01g07480.2 LOB, LOC_Os01g07480 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
LOC_Os01g14030.1 LBD2, LOC_Os01g14030 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os01g66590.2 AS2, LOC_Os01g66590 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
LOC_Os02g57490.1 LBD16, ASL18,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g05500.1 LBD29, ASL16,... transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
LOC_Os05g07270.1 LBD15, ASL11,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os05g27980.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Len_g27554 AS2 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430986g0010 LBD15, ASL11 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
MA_10430986g0020 LBD15, ASL11 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_16646g0010 LBD27, SCP transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_16891g0010 LOB transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
MA_290245g0010 AS2 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_66501g0010 LBD12, ASL5, PCK1 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_86300g0010 LBD16, ASL18 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_88659g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_88711g0010 LBD25 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_962403g0010 LBD19 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Mp4g02620.1 LBD12, ASL5, PCK1 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mp4g10500.1 LBD25 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mp5g17820.1 LBD25 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mp7g00650.1 ASL1, LBD36 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mp7g14810.1 LBD25 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mpzg01450.1 No alias transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Msp_g30882 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44204 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44922 LBD20 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43400 LBD22 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43401 No alias AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g56591 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25313 AS2 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09676 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g27127 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018622 LBD15, ASL11 AS2/LOB-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0188.g025166 LOB AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc01g091420.2.1 LBD18, Solyc01g091420 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc01g098220.2.1 LBD20, Solyc01g098220 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Solyc06g050430.3.1 LBD15, ASL11,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc06g050950.3.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc06g082310.3.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc06g082430.2.1 LBD15, ASL11,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc06g082770.3.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc06g083930.2.1 LBD16, ASL18,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc11g072470.3.1 LBD1, Solyc11g072470 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Solyc12g010810.1.1 LBD2, Solyc12g010810 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Spa_g06126 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g16209 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16798 AS2 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29522 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40992 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g46968 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03811 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05369 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000391_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e001031_P001 LBD18, Zm00001e001031 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e016785_P005 LOB, Zm00001e016785 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e019004_P002 AS2, Zm00001e019004 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e019686_P001 LBD20, Zm00001e019686 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Zm00001e026736_P001 LBD15, ASL11,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e028582_P007 AS2, Zm00001e028582 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e030195_P001 LBD2, Zm00001e030195 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e031510_P001 LBD12, ASL5,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e038582_P001 LBD18, Zm00001e038582 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Zm00001e042347_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e042443_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e042444_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e042448_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 12 109
No external refs found!