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  5. AMTR_s00076p00191640

AMTR_s00076p00191640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00076.80

Description : 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00076p00191640

Target Alias Description ECC score Gene Family Method Actions
Ala_g04792 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18018 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03211 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g27234 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g37015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29974 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g62425 OPCL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01031500001 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_19734 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
MA_161102g0020 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp1g05060.1 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g25651 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01073 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g59700 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g076300.3.1 Solyc08g076300 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc12g094520.2.1 OPCL1, Solyc12g094520 OPC-8:CoA synthetase 0.02 OrthoFinder output from all 47 species
Tin_g07437 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000264_P001 OPCL1, Zm00001e000264 OPC-8:CoA synthetase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0008152 metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 30 103
No external refs found!