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  5. AMTR_s00077p00123980

AMTR_s00077p00123980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.117

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL36a component


Gene families : OG0001983 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001983_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00123980

Target Alias Description ECC score Gene Family Method Actions
AT3G23390 No alias Zinc-binding ribosomal protein family protein 0.08 OrthoFinder output from all 47 species
AT4G14320 No alias Zinc-binding ribosomal protein family protein 0.22 OrthoFinder output from all 47 species
Adi_g074466 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g123881 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g26606 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g33797 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g60012 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g17011 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g33471 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0111.g045692 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0390.g067675 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g69033 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.07G068200.1 Ceric.07G068200 component *(eL42) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ceric.14G031000.1 Ceric.14G031000 component *(eL42) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ceric.16G012300.1 Ceric.16G012300 component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.29G042400.1 Ceric.29G042400 component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000489.11 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Cre06.g310700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Dac_g25357 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dac_g46318 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Dcu_g17062 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g26679 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01012052001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
GSVIVT01032097001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Gb_13148 No alias component RPL36a of LSU proteome component 0.13 OrthoFinder output from all 47 species
Gb_34419 No alias component RPL36a of LSU proteome component 0.16 OrthoFinder output from all 47 species
LOC_Os07g26740.1 LOC_Os07g26740 component RPL36a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Len_g26688 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Lfl_g25065 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
MA_99845g0010 No alias component RPL36a of LSU proteome component 0.23 OrthoFinder output from all 47 species
Mp2g25770.1 No alias component RPL36a of LSU proteome component 0.1 OrthoFinder output from all 47 species
Msp_g06398 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Nbi_g09392 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g00450 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g60179 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pp3c26_11220V3.1 Pp3c26_11220 Zinc-binding ribosomal protein family protein 0.12 OrthoFinder output from all 47 species
Pp3c3_10260V3.1 Pp3c3_10260 Zinc-binding ribosomal protein family protein 0.1 OrthoFinder output from all 47 species
Pp3c4_27290V3.1 Pp3c4_27290 Zinc-binding ribosomal protein family protein 0.04 OrthoFinder output from all 47 species
Pp3c7_20120V3.1 Pp3c7_20120 Zinc-binding ribosomal protein family protein 0.02 OrthoFinder output from all 47 species
Ppi_g27814 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g55666 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007497 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009958 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g05799 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g07243 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g23302 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo161986 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Solyc03g112850.3.1 Solyc03g112850 component RPL36a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Spa_g55229 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Tin_g29053 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Tin_g42814 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e010489_P002 Zm00001e010489 component RPL36a of LSU proteome component 0.25 OrthoFinder output from all 47 species
Zm00001e033410_P001 Zm00001e033410 component RPL36a of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e035123_P001 Zm00001e035123 component RPL36a of LSU proteome component 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000552 Ribosomal_L44e 20 87
No external refs found!