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  5. AMTR_s00078p00178430

AMTR_s00078p00178430 (RPS18A, PFL, PFL1,...)


Aliases : RPS18A, PFL, PFL1, evm_27.TU.AmTr_v1.0_scaffold00078.175

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS18 component


Gene families : OG0001648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00178430
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT1G22780 RPS18A, PFL, PFL1 Ribosomal protein S13/S18 family 0.14 OrthoFinder output from all 47 species
AT1G34030 No alias Ribosomal protein S13/S18 family 0.11 OrthoFinder output from all 47 species
AT4G09800 RPS18C S18 ribosomal protein 0.17 OrthoFinder output from all 47 species
Adi_g079654 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Adi_g110360 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Aop_g07943 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Aspi01Gene18478.t1 RPS18A, PFL,... component *(uS13) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0094.g043510 RPS18A, PFL, PFL1 not classified & original description: CDS=1-351 0.05 OrthoFinder output from all 47 species
Azfi_s0157.g053803 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Azfi_s0393.g067809 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Ceric.06G075100.1 RPS18A, PFL,... component *(uS13) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Ceric.25G059000.1 RPS18A, PFL,... component *(uS13) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Cre06.g272950 RPS18A, PFL, PFL1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.32 OrthoFinder output from all 47 species
Dac_g30011 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Dcu_g07903 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Dcu_g29531 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Dde_g34947 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01017975001 RPS18A, PFL, PFL1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 OrthoFinder output from all 47 species
GSVIVT01034582001 RPS18A, PFL, PFL1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
LOC_Os03g58050.1 RPS18A, PFL,... component RPS18 of SSU proteome 0.22 OrthoFinder output from all 47 species
LOC_Os07g07709.1 RPS18A, PFL,... component RPS18 of SSU proteome 0.04 OrthoFinder output from all 47 species
Len_g15492 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Len_g15493 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g16499 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g23484 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g31910 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g33612 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10429265g0010 RPS18A, PFL, PFL1 component RPS18 of SSU proteome 0.23 OrthoFinder output from all 47 species
MA_10431843g0010 RPS18A, PFL, PFL1 component RPS18 of SSU proteome 0.1 OrthoFinder output from all 47 species
Mp1g07420.1 RPS18A, PFL, PFL1 component RPS18 of SSU proteome 0.26 OrthoFinder output from all 47 species
Mp5g02820.1 RPS18A, PFL, PFL1 component RPS18 of SSU proteome 0.23 OrthoFinder output from all 47 species
Nbi_g05557 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ore_g06073 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ore_g06074 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g07726 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pir_g17989 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Pnu_g03668 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c16_2090V3.1 RPS18A, PFL,... Ribosomal protein S13/S18 family 0.11 OrthoFinder output from all 47 species
Pp3c6_21770V3.1 RPS18A, PFL,... Ribosomal protein S13/S18 family 0.15 OrthoFinder output from all 47 species
Ppi_g22724 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g24083 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g51619 RPS18A, PFL, PFL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g11517 No alias component *(uS13) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Sam_g32254 No alias component *(uS13) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Sam_g35155 No alias component *(uS13) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Smo267619 RPS18A, PFL, PFL1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Solyc03g078290.3.1 RPS18A, PFL,... component RPS18 of SSU proteome 0.19 OrthoFinder output from all 47 species
Solyc06g073370.4.1 RPS18A, PFL,... component RPS18 of SSU proteome 0.19 OrthoFinder output from all 47 species
Solyc11g005680.2.1 RPS18A, PFL,... component RPS18 of SSU proteome 0.1 OrthoFinder output from all 47 species
Spa_g10602 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.18 OrthoFinder output from all 47 species
Spa_g10603 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Spa_g35731 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Spa_g40316 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Tin_g22509 RPS18A, PFL, PFL1 component *(uS13) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Zm00001e005967_P001 RPS18A, PFL,... component RPS18 of SSU proteome 0.23 OrthoFinder output from all 47 species
Zm00001e011880_P001 RPS18A, PFL,... component RPS18 of SSU proteome 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016530 metallochaperone activity IEP HCCA
MF GO:0016531 copper chaperone activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!