Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.203
Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G03510 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G01510 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G49142 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT4G01030 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | OrthoFinder output from all 47 species | |
| AT4G21300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g004400 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g07982 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g11263 | OSB3 | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g07887 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g17265 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g30861 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g31006 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g36208 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g38788 | EMB2758 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g05074 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g09030 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g12064 | EMB2758 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g27294 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g27542 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g29475 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g06679 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g68088 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g70449 | DOT4 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene24271.t1 | Aspi01Gene24271 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g33624 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.13G076400.1 | Ceric.13G076400 | not classified & original description: pacid=50635248... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.33G052800.1 | Ceric.33G052800 | not classified & original description: pacid=50607149... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.38G015500.1 | Ceric.38G015500 | not classified & original description: pacid=50579581... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000342.38 | No alias | Pentatricopeptide repeat-containing protein At5g02860... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g44492 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g06501 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g11730 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g22308 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g22635 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g17701 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g23273 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g29034 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01000968001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01029885001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_17428 | No alias | Pentatricopeptide repeat-containing protein At4g04370... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_36839 | OTP84 | Pentatricopeptide repeat-containing protein At4g13650... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os01g15530.1 | LOC_Os01g15530 | Pentatricopeptide repeat-containing protein At5g56310... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g13230.1 | LOC_Os03g13230 | Pentatricopeptide repeat-containing protein At4g37170... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g63260.3 | LOC_Os03g63260 | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g41120.1 | LOC_Os04g41120 | Pentatricopeptide repeat-containing protein At4g38010... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g24150.1 | LOC_Os05g24150 | Pentatricopeptide repeat-containing protein At2g34400... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g38190.2 | LOC_Os05g38190 | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g29800.1 | LOC_Os06g29800 | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g30940.1 | LOC_Os06g30940 | Pentatricopeptide repeat-containing protein At3g53360,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g04400.1 | LOC_Os08g04400 | Pentatricopeptide repeat-containing protein At5g50390,... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os08g25280.1 | LOC_Os08g25280 | Pentatricopeptide repeat-containing protein At4g39530... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g28830.1 | LOC_Os08g28830 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g07780.1 | OTP84, LOC_Os09g07780 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os10g40920.1 | LOC_Os10g40920 | RNA editing factor (MEF13) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os12g30620.1 | LOC_Os12g30620 | Pentatricopeptide repeat-containing protein At3g29230... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g17363 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g26507 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g12344 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g12945 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g40602 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_139163g0010 | CRR22 | Pentatricopeptide repeat-containing protein At4g13650... | 0.04 | OrthoFinder output from all 47 species | |
| MA_14381g0010 | EMB2758 | Pentatricopeptide repeat-containing protein At3g12770... | 0.03 | OrthoFinder output from all 47 species | |
| MA_480955g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.05 | OrthoFinder output from all 47 species | |
| MA_71104g0010 | CRR22 | Pentatricopeptide repeat-containing protein At3g12770... | 0.04 | OrthoFinder output from all 47 species | |
| MA_79624g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g25833 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g26664 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g28803 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g35189 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g41084 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g41100 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g06586 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g07543 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g14034 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g38394 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g01771 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g09990 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g16979 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g35928 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g45445 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g57665 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g64529 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g27694 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30620 | OTP82 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g03223 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g07362 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g13349 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g18475 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g21699 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g53705 | EMB2758 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g61143 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g62370 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0005.g002764 | No alias | not classified & original description: CDS=1-2754 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g07203 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13892 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14564 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g23897 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo101239 | EMB2758 | Pentatricopeptide repeat-containing protein At4g33990... | 0.06 | OrthoFinder output from all 47 species | |
| Smo122934 | EMB2758 | Pentatricopeptide repeat-containing protein At4g33990... | 0.03 | OrthoFinder output from all 47 species | |
| Smo34785 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
| Smo93321 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc06g068810.4.1 | Solyc06g068810 | Pentatricopeptide repeat-containing protein At5g50990... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g14009 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g14314 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g15000 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g15016 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g15589 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g18446 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g26191 | EMB2261 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g26356 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g28117 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g54669 | MEF9 | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g56457 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g08462 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g26996 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e008203_P002 | Zm00001e008203 | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e011923_P001 | Zm00001e011923 | Pentatricopeptide repeat-containing protein At4g21300... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e036537_P001 | Zm00001e036537 | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004888 | transmembrane signaling receptor activity | IEP | HCCA |
| MF | GO:0004970 | ionotropic glutamate receptor activity | IEP | HCCA |
| MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0005230 | extracellular ligand-gated monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0005231 | excitatory extracellular ligand-gated monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0005234 | extracellularly glutamate-gated ion channel activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| MF | GO:0008066 | glutamate receptor activity | IEP | HCCA |
| MF | GO:0015075 | monoatomic ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015267 | channel activity | IEP | HCCA |
| MF | GO:0015276 | ligand-gated monoatomic ion channel activity | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022824 | transmitter-gated monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0022834 | ligand-gated channel activity | IEP | HCCA |
| MF | GO:0022835 | transmitter-gated channel activity | IEP | HCCA |
| MF | GO:0022836 | gated channel activity | IEP | HCCA |
| MF | GO:0022839 | monoatomic ion gated channel activity | IEP | HCCA |
| MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
| CC | GO:0030288 | outer membrane-bounded periplasmic space | IEP | HCCA |
| MF | GO:0030594 | neurotransmitter receptor activity | IEP | HCCA |
| MF | GO:0038023 | signaling receptor activity | IEP | HCCA |
| CC | GO:0042597 | periplasmic space | IEP | HCCA |
| MF | GO:0060089 | molecular transducer activity | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 340 | 363 |
| IPR002885 | Pentatricopeptide_repeat | 543 | 571 |
| IPR002885 | Pentatricopeptide_repeat | 716 | 741 |
| IPR002885 | Pentatricopeptide_repeat | 617 | 638 |
| IPR002885 | Pentatricopeptide_repeat | 11 | 34 |
| IPR002885 | Pentatricopeptide_repeat | 243 | 271 |
| IPR002885 | Pentatricopeptide_repeat | 312 | 337 |
| IPR002885 | Pentatricopeptide_repeat | 114 | 139 |
| IPR002885 | Pentatricopeptide_repeat | 140 | 184 |
| IPR002885 | Pentatricopeptide_repeat | 37 | 84 |
| IPR002885 | Pentatricopeptide_repeat | 643 | 689 |
| IPR002885 | Pentatricopeptide_repeat | 439 | 485 |
| No external refs found! |
