Aliases : evm_27.TU.AmTr_v1.0_scaffold00079.19
Description : Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit
Gene families : OG0000735 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000735_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00079p00061090 | |
| Cluster | HCCA: Cluster_102 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G67090 | RBCS1A | ribulose bisphosphate carboxylase small chain 1A | 0.19 | OrthoFinder output from all 47 species | |
| AT5G38410 | No alias | Ribulose bisphosphate carboxylase (small chain) family protein | 0.19 | OrthoFinder output from all 47 species | |
| AT5G38420 | No alias | Ribulose bisphosphate carboxylase (small chain) family protein | 0.17 | OrthoFinder output from all 47 species | |
| AT5G38430 | No alias | Ribulose bisphosphate carboxylase (small chain) family protein | 0.11 | OrthoFinder output from all 47 species | |
| Ala_g09842 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g19484 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.01 | OrthoFinder output from all 47 species | |
| Als_g60911 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g08171 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g09818 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.07 | OrthoFinder output from all 47 species | |
| Aob_g24117 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.06 | OrthoFinder output from all 47 species | |
| Aob_g33021 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.11 | OrthoFinder output from all 47 species | |
| Aob_g41554 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g21743 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene02941.t1 | RBCS1A, Aspi01Gene02941 | small subunit of ribulose-1,5-bisphosphat... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene45745.t1 | RBCS1A, Aspi01Gene45745 | small subunit of ribulose-1,5-bisphosphat... | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g37481 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.09G050600.1 | RBCS1A, Ceric.09G050600 | small subunit of ribulose-1,5-bisphosphat... | 0.18 | OrthoFinder output from all 47 species | |
| Ceric.09G050700.1 | RBCS1A, Ceric.09G050700 | small subunit of ribulose-1,5-bisphosphat... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.09G050800.1 | RBCS1A, Ceric.09G050800 | small subunit of ribulose-1,5-bisphosphat... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.09G050900.1 | RBCS1A, Ceric.09G050900 | small subunit of ribulose-1,5-bisphosphat... | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.09G051100.1 | RBCS1A, Ceric.09G051100 | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.09G051200.1 | RBCS1A, Ceric.09G051200 | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.09G051300.1 | RBCS1A, Ceric.09G051300 | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.09G051400.1 | RBCS1A, Ceric.09G051400 | small subunit of ribulose-1,5-bisphosphat... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.09G051500.1 | RBCS1A, Ceric.09G051500 | small subunit of ribulose-1,5-bisphosphat... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.09G051600.1 | RBCS1A, Ceric.09G051600 | small subunit of ribulose-1,5-bisphosphat... | 0.14 | OrthoFinder output from all 47 species | |
| Ceric.09G051700.1 | RBCS1A, Ceric.09G051700 | small subunit of ribulose-1,5-bisphosphat... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.09G051800.1 | RBCS1A, Ceric.09G051800 | small subunit of ribulose-1,5-bisphosphat... | 0.15 | OrthoFinder output from all 47 species | |
| Ceric.09G051900.1 | RBCS1A, Ceric.09G051900 | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Cre02.g120100 | RBCS1A | Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... | 0.07 | OrthoFinder output from all 47 species | |
| Cre02.g120150 | RBCS1A | Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g09882 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g20638 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.17 | OrthoFinder output from all 47 species | |
| Dcu_g33446 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.19 | OrthoFinder output from all 47 species | |
| Dcu_g51202 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.18 | OrthoFinder output from all 47 species | |
| Dde_g36766 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.21 | OrthoFinder output from all 47 species | |
| Ehy_g04204 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.09 | OrthoFinder output from all 47 species | |
| Ehy_g11463 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g14905 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01008288001 | No alias | Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... | 0.12 | OrthoFinder output from all 47 species | |
| Gb_00380 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.13 | OrthoFinder output from all 47 species | |
| Gb_00381 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.12 | OrthoFinder output from all 47 species | |
| LOC_Os12g17600.1 | RBCS1A, LOC_Os12g17600 | small subunit of ribulose-1,5-bisphosphat... | 0.15 | OrthoFinder output from all 47 species | |
| LOC_Os12g19381.1 | RBCS1A, LOC_Os12g19381 | small subunit of ribulose-1,5-bisphosphat... | 0.13 | OrthoFinder output from all 47 species | |
| LOC_Os12g19470.2 | RBCS1A, LOC_Os12g19470 | small subunit of ribulose-1,5-bisphosphat... | 0.11 | OrthoFinder output from all 47 species | |
| Lfl_g17059 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g31310 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.01 | OrthoFinder output from all 47 species | |
| MA_47626g0010 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.14 | OrthoFinder output from all 47 species | |
| Mp4g05980.1 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g05990.1 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g06010.1 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g06020.1 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g06030.1 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g06050.1 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.08 | OrthoFinder output from all 47 species | |
| Mp4g09890.1 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g10850.1 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.09 | OrthoFinder output from all 47 species | |
| Mp4g15070.1 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.04 | OrthoFinder output from all 47 species | |
| Mp4g15080.1 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g16796 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.09 | OrthoFinder output from all 47 species | |
| Pir_g12333 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g54622 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.12 | OrthoFinder output from all 47 species | |
| Pir_g63695 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.06 | OrthoFinder output from all 47 species | |
| Pnu_g12024 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c13_15980V3.1 | RBCS1A, Pp3c13_15980 | ribulose bisphosphate carboxylase small chain 1A | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c19_1840V3.1 | RBCS1A, Pp3c19_1840 | Ribulose bisphosphate carboxylase (small chain) family protein | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c3_14510V3.1 | RBCS1A, Pp3c3_14510 | ribulose bisphosphate carboxylase small chain 1A | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c3_20140V3.1 | RBCS1A, Pp3c3_20140 | ribulose bisphosphate carboxylase small chain 1A | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c4_11770V3.1 | RBCS1A, Pp3c4_11770 | Ribulose bisphosphate carboxylase (small chain) family protein | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g31547 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g31548 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g32726 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.09 | OrthoFinder output from all 47 species | |
| Ppi_g60704 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.06 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0124.g021603 | RBCS1A | small subunit of ribulose-1,5-bisphosphat... | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g23016 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.1 | OrthoFinder output from all 47 species | |
| Sam_g36381 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.09 | OrthoFinder output from all 47 species | |
| Smo147927 | No alias | Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... | 0.08 | OrthoFinder output from all 47 species | |
| Solyc02g063150.3.1 | Solyc02g063150 | small subunit of ribulose-1,5-bisphosphat... | 0.13 | OrthoFinder output from all 47 species | |
| Solyc02g085950.4.1 | Solyc02g085950 | small subunit of ribulose-1,5-bisphosphat... | 0.18 | OrthoFinder output from all 47 species | |
| Solyc03g034220.3.1 | Solyc03g034220 | small subunit of ribulose-1,5-bisphosphat... | 0.1 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0004047 | aminomethyltransferase activity | IEP | HCCA |
| MF | GO:0004089 | carbonate dehydratase activity | IEP | HCCA |
| MF | GO:0004618 | phosphoglycerate kinase activity | IEP | HCCA |
| MF | GO:0005261 | monoatomic cation channel activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| MF | GO:0005516 | calmodulin binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006096 | glycolytic process | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
| BP | GO:0006544 | glycine metabolic process | IEP | HCCA |
| BP | GO:0006546 | glycine catabolic process | IEP | HCCA |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
| BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
| BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity | IEP | HCCA |
| BP | GO:0009056 | catabolic process | IEP | HCCA |
| BP | GO:0009063 | amino acid catabolic process | IEP | HCCA |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | HCCA |
| BP | GO:0009071 | serine family amino acid catabolic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| MF | GO:0009678 | pyrophosphate hydrolysis-driven proton transmembrane transporter activity | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010109 | regulation of photosynthesis | IEP | HCCA |
| MF | GO:0015252 | proton channel activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
| BP | GO:0016054 | organic acid catabolic process | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | HCCA |
| MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | HCCA |
| MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0019829 | ATPase-coupled monoatomic cation transmembrane transporter activity | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| MF | GO:0022853 | active monoatomic ion transmembrane transporter activity | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | HCCA |
| CC | GO:0034357 | photosynthetic membrane | IEP | HCCA |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0042549 | photosystem II stabilization | IEP | HCCA |
| MF | GO:0042625 | ATPase-coupled ion transmembrane transporter activity | IEP | HCCA |
| CC | GO:0042651 | thylakoid membrane | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0044282 | small molecule catabolic process | IEP | HCCA |
| MF | GO:0044769 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | IEP | HCCA |
| CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | HCCA |
| BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| BP | GO:0046395 | carboxylic acid catabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | HCCA |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
| MF | GO:0046961 | proton-transporting ATPase activity, rotational mechanism | IEP | HCCA |
| MF | GO:0048037 | obsolete cofactor binding | IEP | HCCA |
| MF | GO:0051287 | NAD binding | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | HCCA |
| BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
| BP | GO:1901606 | alpha-amino acid catabolic process | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| No external refs found! |
