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  5. AMTR_s00085p00052820

AMTR_s00085p00052820 (CDC48A, CDC48,...)


Aliases : CDC48A, CDC48, ATCDC48, evm_27.TU.AmTr_v1.0_scaffold00085.22

Description : Cell division cycle protein 48 homolog OS=Glycine max


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00085p00052820

Target Alias Description ECC score Gene Family Method Actions
Adi_g014923 CIP111 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054679 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080379 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07270 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20264 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14974 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g33182 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02580 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G014100.1 Ceric.14G014100 platform ATPase CDC48 & original description:... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000525.10 emb1354, CDC48C Cell division control protein 48 homolog C... 0.01 OrthoFinder output from all 47 species
Cre06.g269950 No alias Cell division control protein 48 homolog E... 0.01 OrthoFinder output from all 47 species
Cre09.g401182 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g09762 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10601 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03992 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09095 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09970 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025723001 No alias Cell division control protein 48 homolog D... 0.03 OrthoFinder output from all 47 species
LOC_Os03g05730.1 LOC_Os03g05730 platform ATPase (CDC48) 0.04 OrthoFinder output from all 47 species
MA_10429450g0010 No alias Cell division control protein 48 homolog D... 0.02 OrthoFinder output from all 47 species
MA_26837g0010 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_893724g0010 CDC48B Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g19173 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13016 CIP111 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18794 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12429 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13901 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51289 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g074980.3.1 Solyc06g074980 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Solyc10g084050.2.1 Solyc10g084050 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Spa_g22537 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15152 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15369 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000416_P002 Zm00001e000416 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Zm00001e004696_P001 Zm00001e004696 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Zm00001e012761_P001 Zm00001e012761 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
CC GO:0000145 exocyst IEP HCCA
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 249 378
IPR003959 ATPase_AAA_core 522 655
IPR003338 CDC4_N-term_subdom 34 116
IPR004201 Cdc48_dom2 136 199
No external refs found!