AMTR_s00088p00111920 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.75

No description available

Gene families : OG0000514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000514_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00088p00111920
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
AT3G48060	No alias	BAH domain ;TFIIS helical bundle-like domain	0.03	OrthoFinder output from all 47 species
Aev_g46582	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.02	OrthoFinder output from all 47 species
Als_g20531	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g33736	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.03	OrthoFinder output from all 47 species
Als_g62379	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g02378	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0100.g044240	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.06	OrthoFinder output from all 47 species
Azfi_s0124.g048462	No alias	not classified & original description: CDS=36-3404	0.03	OrthoFinder output from all 47 species
Azfi_s0276.g061462	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.05	OrthoFinder output from all 47 species
Cba_g07774	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g17046	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g20508	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.02G029300.1	Ceric.02G029300	not classified & original description: pacid=50584188...	0.05	OrthoFinder output from all 47 species
Ceric.16G046100.1	Ceric.16G046100	not classified & original description: pacid=50589203...	0.03	OrthoFinder output from all 47 species
Ceric.24G078000.1	Ceric.24G078000	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.06	OrthoFinder output from all 47 species
Ceric.29G076700.1	Ceric.29G076700	not classified & original description: pacid=50624845...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001215.1	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g15540	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.03	OrthoFinder output from all 47 species
Dde_g23073	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07123	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g14694	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.04	OrthoFinder output from all 47 species
Ehy_g15177	No alias	PSY precursor polypeptide & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007806001	No alias	No description available	0.05	OrthoFinder output from all 47 species
GSVIVT01024041001	No alias	No description available	0.03	OrthoFinder output from all 47 species
GSVIVT01032521001	No alias	No description available	0.03	OrthoFinder output from all 47 species
Gb_02775	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os02g50840.2	LOC_Os02g50840	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os06g42490.1	LOC_Os06g42490	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_710118g0020	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Mp4g16160.1	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Mp4g16230.1	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Nbi_g01479	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g04481	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.02	OrthoFinder output from all 47 species
Nbi_g22070	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25799	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.02	OrthoFinder output from all 47 species
Pir_g06454	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.04	OrthoFinder output from all 47 species
Pir_g51839	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g41929	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.06	OrthoFinder output from all 47 species
Ppi_g56304	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005665	No alias	not classified & original description: CDS=481-3921	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018052	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.02	OrthoFinder output from all 47 species
Sam_g04915	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g08181	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g29218	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.03	OrthoFinder output from all 47 species
Solyc03g114060.3.1	Solyc03g114060	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Solyc06g071350.4.1	Solyc06g071350	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc12g089320.3.1	Solyc12g089320	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Spa_g12816	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g25845	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.03	OrthoFinder output from all 47 species
Tin_g13967	No alias	regulatory protein *(SUO) of miRNA biogenesis pathway &...	0.03	OrthoFinder output from all 47 species
Zm00001e002441_P003	Zm00001e002441	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Zm00001e013353_P001	Zm00001e013353	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e037792_P001	Zm00001e037792	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e037793_P001	Zm00001e037793	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0006470	protein dephosphorylation	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015693	magnesium ion transport	IEP	HCCA
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017923	TFIIS_N	333	383
IPR001025	BAH_dom	14	122

External Links

No external refs found!

AMTR_s00088p00111920 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation