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  5. AMTR_s00088p00121090

AMTR_s00088p00121090 (WLIM1,...)


Aliases : WLIM1, evm_27.TU.AmTr_v1.0_scaffold00088.87

Description : RNA biosynthesis.transcriptional activation.LIM transcription factor


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00121090

Target Alias Description ECC score Gene Family Method Actions
AT3G55770 No alias GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g006630 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11111 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21872 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20213.t1 Aspi01Gene20213 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00234 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006952 defense response IEP HCCA
MF GO:0008430 selenium binding IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0046417 chorismate metabolic process IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 110 165
IPR001781 Znf_LIM 10 64
No external refs found!