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  5. AMTR_s00088p00174110

AMTR_s00088p00174110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.150

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00174110
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT4G26650 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
Adi_g054784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g064547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g49724 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03820 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g32654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18512.t1 Aspi01Gene18512 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene41899.t1 Aspi01Gene41899 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene52588.t1 Aspi01Gene52588 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06314 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_13606g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g07522 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002214 No alias not classified & original description: CDS=892-2337 0.04 OrthoFinder output from all 47 species
Solyc04g014820.4.1 Solyc04g014820 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
Solyc07g048030.4.1 Solyc07g048030 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Solyc11g012470.2.1 Solyc11g012470 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Spa_g28993 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e010648_P001 Zm00001e010648 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e032753_P002 Zm00001e032753 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 75
IPR000504 RRM_dom 108 176
No external refs found!