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  5. AMTR_s00099p00124180

AMTR_s00099p00124180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00099.106

Description : RNA biosynthesis.transcriptional activation.PHD finger transcription factor


Gene families : OG0003400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00099p00124180
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
LOC_Os11g12650.1 LOC_Os11g12650 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
MA_159666g0010 No alias MMD1/DUET meiotic recombination regulating protein. PHD... 0.04 OrthoFinder output from all 47 species
Zm00001e028631_P001 Zm00001e028631 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 591 637
No external refs found!