AMTR_s00107p00035950 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00107.14

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component

Gene families : OG0002232 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002232_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00107p00035950

Target	Alias	Description	ECC score	Gene Family Method
AT3G63490	No alias	Ribosomal protein L1p/L10e family	0.04	OrthoFinder output from all 47 species
Adi_g083284	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aev_g11306	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ala_g13358	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Als_g06949	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aob_g31675	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aop_g11179	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aspi01Gene02934.t1	Aspi01Gene02934	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aspi01Gene55148.t1	Aspi01Gene55148	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0065.g035757	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Cba_g25894	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.36G042400.1	Ceric.36G042400	component *(uL1c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cre02.g088900	No alias	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Dac_g00779	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g06155	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Dde_g12366	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01020727001	No alias	Protein biosynthesis.organelle translation...	0.01	OrthoFinder output from all 47 species
GSVIVT01032196001	No alias	Protein biosynthesis.organelle translation...	0.14	OrthoFinder output from all 47 species
Gb_16169	No alias	component psRPL1 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
LOC_Os05g32220.1	LOC_Os05g32220	component psRPL1 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Len_g24587	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Lfl_g03897	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Lfl_g19309	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Lfl_g33157	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10002614g0010	No alias	50S ribosomal protein L1, chloroplastic OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
MA_310797g0010	No alias	50S ribosomal protein L1, chloroplastic OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp1g07500.1	No alias	component psRPL1 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Msp_g12689	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g11958	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ore_g28354	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pir_g01275	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ppi_g41124	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023589	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g18339	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Smo143134	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Spa_g16769	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Tin_g00638	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Zm00001e031570_P001	Zm00001e031570	component psRPL1 of large ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016987	sigma factor activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002143	Ribosomal_L1	144	344

External Links

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AMTR_s00107p00035950 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation