AMTR_s00109p00056900 (AtLa1, La1,...)


Aliases : AtLa1, La1, evm_27.TU.AmTr_v1.0_scaffold00109.42

Description : La protein 1 OS=Arabidopsis thaliana


Gene families : OG0003172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003172_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00056900

Target Alias Description ECC score Gene Family Method Actions
AT4G32720 AtLa1, La1 La protein 1 0.05 OrthoFinder output from all 47 species
Adi_g012248 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g092894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11405 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11426 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g09267 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035666001 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
LOC_Os04g42010.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.03 OrthoFinder output from all 47 species
MA_10259599g0010 AtLa1, La1 RNA chaperone (LA). rRNA chaperone (IRP2) 0.03 OrthoFinder output from all 47 species
MA_78251g0010 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Pir_g00573 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c21_14880V3.1 AtLa1, La1, Pp3c21_14880 La protein 1 0.01 OrthoFinder output from all 47 species
Ppi_g04561 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Smo168828 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc08g068310.3.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.04 OrthoFinder output from all 47 species
Tin_g31164 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015074_P001 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR014886 La_xRRM 356 454
IPR006630 La_HTH 14 85
No external refs found!