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  5. AMTR_s00109p00061950

AMTR_s00109p00061950 (MYB3R-1, ATMYB3R1,...)


Aliases : MYB3R-1, ATMYB3R1, PC-MYB1, MYB3R1, ATMYB3R-1, evm_27.TU.AmTr_v1.0_scaffold00109.47

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00061950
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AT1G14350 AtMYB124, MYB124, FLP Duplicated homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G39880 AtMYB25, MYB25 myb domain protein 25 0.06 OrthoFinder output from all 47 species
AT5G11510 AtMYB3R4, MYB3R-4 myb domain protein 3r-4 0.2 OrthoFinder output from all 47 species
Adi_g083870 ATMYB3R5, MYB3R-5 R1R2R3-MYB transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16421 MYB88, AtMYB88 MYB class-R2R3 transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02622 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14702 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Als_g15721 LOF2, MYB105, ATMYB105 MYB class-R2R3 subgroup-21 transcription factor &... 0.04 OrthoFinder output from all 47 species
Als_g47836 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g10604 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23891 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09729 ATMYB3R5, MYB3R-5 R1R2R3-MYB transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g12966 MYB88, AtMYB88 MYB class-R2R3 transcription factor & original description: none 0.12 OrthoFinder output from all 47 species
Aspi01Gene07170.t2 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32034.t1 AtMYB124,... MYB class-R2R3 transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene47785.t1 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Azfi_s0001.g000218 AtMYB117, LOF1, MYB117 MYB class-R2R3 subgroup-21 transcription factor &... 0.02 OrthoFinder output from all 47 species
Azfi_s0145.g051658 MYB88, AtMYB88 MYB class-R2R3 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0179.g056258 MYB3R-1,... R1R2R3-MYB transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.01G063500.1 MYBR1, MYB44,... MYB class-R2R3 subgroup-22/23 transcription factor &... 0.02 OrthoFinder output from all 47 species
Ceric.13G051800.1 MYB88, AtMYB88,... MYB class-R2R3 transcription factor & original... 0.07 OrthoFinder output from all 47 species
Ceric.33G050100.1 MYB3R-1,... R1R2R3-MYB transcription factor & original description:... 0.08 OrthoFinder output from all 47 species
Ceric.39G017100.1 MYB88, AtMYB88,... MYB class-R2R3 transcription factor & original... 0.2 OrthoFinder output from all 47 species
Cre02.g103450 MYB88, AtMYB88 RNA biosynthesis.transcriptional activation.MYB... 0.01 OrthoFinder output from all 47 species
Cre07.g345350 MYBR1, MYB44,... RNA biosynthesis.transcriptional activation.MYB... 0.01 OrthoFinder output from all 47 species
Dac_g04675 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g09101 LOF2, MYB105, ATMYB105 MYB class-R2R3 subgroup-21 transcription factor &... 0.02 OrthoFinder output from all 47 species
Dcu_g12641 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.21 OrthoFinder output from all 47 species
Ehy_g05787 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.03 OrthoFinder output from all 47 species
GSVIVT01015370001 MYB3R-1,... RNA biosynthesis.transcriptional activation.MYB... 0.14 OrthoFinder output from all 47 species
GSVIVT01035663001 MYB3R-1,... RNA biosynthesis.transcriptional activation.MYB... 0.2 OrthoFinder output from all 47 species
LOC_Os01g12860.1 MYB3R-1,... transcription factor (MYB) 0.08 OrthoFinder output from all 47 species
LOC_Os12g13570.1 MYB3R-1,... transcription factor (MYB) 0.15 OrthoFinder output from all 47 species
Len_g16435 ATMYB3R5, MYB3R-5 R1R2R3-MYB transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Len_g27982 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Len_g56915 MYB88, AtMYB88 MYB class-R2R3 transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Lfl_g09604 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18053 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
MA_34970g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_605711g0010 No alias Transcription factor MYB3R-4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g20543 ATMYB3R5, MYB3R-5 R1R2R3-MYB transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g44400 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.12 OrthoFinder output from all 47 species
Nbi_g02270 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.2 OrthoFinder output from all 47 species
Nbi_g09308 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10936 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.15 OrthoFinder output from all 47 species
Nbi_g24734 LOF2, MYB105, ATMYB105 MYB class-R2R3 subgroup-21 transcription factor &... 0.03 OrthoFinder output from all 47 species
Ppi_g08219 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g12324 LOF2, MYB105, ATMYB105 MYB class-R2R3 subgroup-21 transcription factor &... 0.02 OrthoFinder output from all 47 species
Ppi_g12915 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011562 LOF2, MYB105, ATMYB105 MYB class-R2R3 subgroup-21 transcription factor &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015735 MYB3R-1,... R1R2R3-MYB transcription factor & original description:... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0272.g027032 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc08g068320.3.1 MYB3R-1,... transcription factor (MYB) 0.04 OrthoFinder output from all 47 species
Solyc08g080580.4.1 MYB3R-1,... transcription factor (MYB) 0.05 OrthoFinder output from all 47 species
Solyc11g071300.2.1 MYB3R-1,... transcription factor (MYB) 0.14 OrthoFinder output from all 47 species
Spa_g39449 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g06126 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12262 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g13864 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43768 LOF2, MYB105, ATMYB105 MYB class-R2R3 subgroup-21 transcription factor &... 0.03 OrthoFinder output from all 47 species
Zm00001e014203_P004 AtMYB3R4,... transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
Zm00001e031356_P001 MYB3R-1,... transcription factor (MYB) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 104 150
IPR001005 SANT/Myb 52 98
IPR001005 SANT/Myb 156 199
No external refs found!