AMTR_s00109p00088200 (ATRPS13A, RPS13,...)

Aliases : ATRPS13A, RPS13, PFL2, RPS13A, evm_27.TU.AmTr_v1.0_scaffold00109.71

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS13 component

Gene families : OG0001931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001931_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00109p00088200
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AT3G60770	No alias	Ribosomal protein S13/S15	0.07	OrthoFinder output from all 47 species
AT4G00100	ATRPS13A, RPS13,...	ribosomal protein S13A	0.07	OrthoFinder output from all 47 species
Adi_g074584	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g41112	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aspi01Gene58740.t1	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0288.g063234	No alias	component *(uS15) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.14G028200.1	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ceric.14G028300.1	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.24G030900.1	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000489.15	ATRPS13A, RPS13,...	40S ribosomal protein S13 OS=Glycine max	0.01	OrthoFinder output from all 47 species
Cre07.g331900	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
Dac_g03966	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g10636	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01018537001	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01027637001	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Gb_16397	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.03	OrthoFinder output from all 47 species
Gb_18181	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.05	OrthoFinder output from all 47 species
Gb_34582	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.05	OrthoFinder output from all 47 species
LOC_Os07g38540.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os08g02400.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.09	OrthoFinder output from all 47 species
LOC_Os08g02410.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.05	OrthoFinder output from all 47 species
MA_141232g0010	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.05	OrthoFinder output from all 47 species
Mp4g03410.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.07	OrthoFinder output from all 47 species
Msp_g28279	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g11979	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c16_15220V3.1	ATRPS13A, RPS13,...	ribosomal protein S13A	0.08	OrthoFinder output from all 47 species
Pp3c7_26720V3.1	ATRPS13A, RPS13,...	ribosomal protein S13A	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016899	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g18450	No alias	component *(uS15) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g20369	No alias	component *(uS15) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g37409	No alias	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Smo440805	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc01g091220.3.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.05	OrthoFinder output from all 47 species
Solyc03g083530.3.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.08	OrthoFinder output from all 47 species
Solyc05g051000.3.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc10g018250.2.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.05	OrthoFinder output from all 47 species
Solyc11g072260.2.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.07	OrthoFinder output from all 47 species
Spa_g03180	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Spa_g56598	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e021837_P003	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.07	OrthoFinder output from all 47 species
Zm00001e021839_P001	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.06	OrthoFinder output from all 47 species
Zm00001e029210_P002	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
MF	GO:0018580	nitronate monooxygenase activity	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000589	Ribosomal_S15	67	150
IPR012606	Ribosomal_S13/S15_N	1	60

External Links

No external refs found!

AMTR_s00109p00088200 (ATRPS13A, RPS13,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation