1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00110p00143620

AMTR_s00110p00143620 (PDCB2, E13L3,...)


Aliases : PDCB2, E13L3, evm_27.TU.AmTr_v1.0_scaffold00110.120

Description : PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana


Gene families : OG0000198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000198_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00110p00143620
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT1G66855 No alias Carbohydrate-binding X8 domain superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G66870 No alias Carbohydrate-binding X8 domain superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G63240 No alias Carbohydrate-binding X8 domain superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g28990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06893 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g30202 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g38386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g00460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G030300.1 Ceric.16G030300 not classified & original description: pacid=50589646... 0.04 OrthoFinder output from all 47 species
Ceric.27G011500.1 Ceric.27G011500 not classified & original description: pacid=50604942... 0.03 OrthoFinder output from all 47 species
Dac_g01899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04433 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g21791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g37072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g52112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014068001 No alias Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea 0.04 OrthoFinder output from all 47 species
GSVIVT01021386001 No alias Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01036726001 No alias PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_00481 No alias Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os07g40940.1 PDCB2, E13L3,... PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g04122 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g14015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g35967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_8718849g0010 No alias Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_962758g0010 No alias Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g07659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24416 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g29067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g39197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g39199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07546 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g24240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43792 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g31796 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012023 No alias not classified & original description: CDS=866-1510 0.05 OrthoFinder output from all 47 species
Sam_g24668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g31368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo115863 No alias Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea 0.02 OrthoFinder output from all 47 species
Solyc03g115200.3.1 PDCB1, Solyc03g115200 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc09g091920.3.1 Solyc09g091920 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc12g098410.2.1 Solyc12g098410 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g28067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002008_P001 PDCB2, E13L3,... Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e005720_P001 PDCB2, E13L3,... PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
InterPro domains Description Start Stop
IPR012946 X8 7 77
No external refs found!